# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	2.14e-14		
2p4pA	86	3.87e-14		
2o1rA	81	3.92e-14		
2pliA	91	5.13e-14		
2r2zA	93	5.46e-14		
2nqwA	93	6.33e-14		
2p13A	90	1.27e-13		
2rk5A	87	6.64e-13		
2p3hA	101	7.31e-13		
2oaiA	94	2.25e-12		
3ddjA	296	0.01832		
1pbwA	216	0.4195	a.116.1.1	19103
2vfrA	422	0.7550		
2yvsA	219	1.357		
1w1oA	534	7.385	d.58.32.4,d.145.1.1	109071,109072
1wvfA	520	13.56	d.58.32.1,d.145.1.1	121337,121338
1wviA	257	17.52	c.108.1.14	114915
2ovjA	201	22.78		
1gxyA	226	26.20	d.166.1.3	76380
2qv2A	342	29.17		
1ei7A	158	29.27	a.24.5.1	16584
1zkdA	387	33.77	c.66.1.52	125184
2pp6A	102	34.86		
2cx4A	164	35.50	c.47.1.10	130973
1hplA	449	35.56	b.12.1.2,c.69.1.19	23639,34787
1tx4A	198	37.98	a.116.1.1	19098
1uf3A	228	38.65	d.159.1.6	99317
2q5wD	77	42.33		
1i8dA	213	43.19	b.43.4.3,b.43.4.3	61953,61954
2i51A	195	44.19		
3ddyA	186	45.27		
2uuuA	584	51.28		
1neeA	138	52.40	d.241.1.1,g.59.1.1	91841,91842
2ctdA	96	59.93	g.37.1.1,g.37.1.1	130792,130793
2ywnA	157	62.31		
2nyiA	195	64.64		
1ahlA	49	65.79	g.9.1.1	44601
2dkoA	146	66.36		
2ce0A	105	68.24		
1q77A	138	69.33	c.26.2.4	96023
3ce7A	107	69.60		
2q4wA	524	71.49		
1xvaA	292	77.00	c.66.1.5	34183
2qnwA	82	79.25		
1w85I	49	81.57	a.9.1.1	114347
1xfiA	367	83.71	e.50.1.1	109584
2a4vA	159	85.18	c.47.1.10	126163
1w24A	182	85.66	d.159.1.7	120579
1xebA	150	87.75	d.108.1.1	115219