# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2o1rA	81	6.91e-14		
2plsA	86	8.86e-14		
2p13A	90	1.81e-13		
2nqwA	93	1.86e-13		
2pliA	91	2.12e-13		
2r2zA	93	2.16e-13		
2p4pA	86	2.62e-13		
2rk5A	87	2.05e-12		
2p3hA	101	2.19e-12		
2oaiA	94	3.14e-12		
3ddjA	296	0.01661		
2yvsA	219	1.466		
1pbwA	216	1.791	a.116.1.1	19103
2vfrA	422	1.835		
1wviA	257	6.164	c.108.1.14	114915
1w1oA	534	13.38	d.58.32.4,d.145.1.1	109071,109072
2qv2A	342	15.72		
1wvfA	520	15.95	d.58.32.1,d.145.1.1	121337,121338
2cx4A	164	20.14	c.47.1.10	130973
3ddyA	186	21.82		
2pp6A	102	22.14		
1i8dA	213	24.86	b.43.4.3,b.43.4.3	61953,61954
1hplA	449	29.74	b.12.1.2,c.69.1.19	23639,34787
2g2kA	170	33.79		
1nd6A	354	37.52	c.60.1.2	80407
1kzlA	208	39.40	b.43.4.3,b.43.4.3	77635,77636
2qnwA	82	40.23		
1t8kA	77	41.11	a.28.1.1	106666
2qxfA	482	42.31		
3ce7A	107	43.80		
2d74B	148	49.60		
2ovjA	201	50.09		
1s9uA	207	54.71	a.184.1.1	105390
2ctdA	96	58.36	g.37.1.1,g.37.1.1	130792,130793
1lu4A	136	59.34	c.47.1.10	91124
2dkoA	146	61.70		
2ywnA	157	62.50		
2h5eA	529	63.68		
2ehsA	77	64.34		
1w85I	49	66.04	a.9.1.1	114347
1zkdA	387	69.52	c.66.1.52	125184
2qs9A	194	72.71		
1neeA	138	75.67	d.241.1.1,g.59.1.1	91841,91842
1rlmA	271	75.97	c.108.1.10	111860
3bjuA	521	76.04		
2q5wD	77	77.20		
2ipiA	521	77.36		
2ce0A	105	83.40		
1tx4A	198	84.66	a.116.1.1	19098
1fxxA	482	85.05	c.55.3.5	33726
1q77A	138	85.59	c.26.2.4	96023
2gfiA	458	87.70		
2nw5A	360	88.70		
2a4vA	159	89.59	c.47.1.10	126163