# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	3.22e-14		
2o1rA	81	4.04e-14		
2pliA	91	8.35e-14		
2r2zA	93	1.23e-13		
2p4pA	86	1.55e-13		
2p13A	90	1.77e-13		
2nqwA	93	3.59e-13		
2p3hA	101	1.30e-12		
2rk5A	87	1.59e-12		
2oaiA	94	3.93e-12		
3ddjA	296	0.04181		
1pbwA	216	0.3191	a.116.1.1	19103
2yvsA	219	0.8392		
2vfrA	422	1.403		
1wviA	257	5.865	c.108.1.14	114915
1i8dA	213	15.50	b.43.4.3,b.43.4.3	61953,61954
1w1oA	534	16.16	d.58.32.4,d.145.1.1	109071,109072
1wvfA	520	16.99	d.58.32.1,d.145.1.1	121337,121338
2pp6A	102	17.58		
3ddyA	186	22.86		
1nd6A	354	25.30	c.60.1.2	80407
2qv2A	342	25.81		
1kzlA	208	27.36	b.43.4.3,b.43.4.3	77635,77636
2qnwA	82	36.00		
1hplA	449	36.27	b.12.1.2,c.69.1.19	23639,34787
1rlmA	271	37.74	c.108.1.10	111860
3ce7A	107	39.30		
1t8kA	77	41.12	a.28.1.1	106666
1q77A	138	41.61	c.26.2.4	96023
2gcuA	245	42.21		
2qxfA	482	43.07		
2d74B	148	44.25		
2cx4A	164	44.60	c.47.1.10	130973
2ovjA	201	44.60		
2ipiA	521	45.88		
1zr6A	503	46.65		
1tx4A	198	49.34	a.116.1.1	19098
1zkdA	387	50.72	c.66.1.52	125184
1ei7A	158	52.50	a.24.5.1	16584
2obwA	258	57.61		
1neeA	138	62.14	d.241.1.1,g.59.1.1	91841,91842
2uuuA	584	62.97		
2ctdA	96	65.59	g.37.1.1,g.37.1.1	130792,130793
1w85I	49	67.52	a.9.1.1	114347
2q5wD	77	67.74		
1yrkA	126	69.76		
2ywnA	157	70.02		
2g2kA	170	70.40		
2ehsA	77	72.80		
2veoA	441	73.26		
2bvfA	459	74.71		
3bjuA	521	75.28		
1vioA	243	77.29	d.265.1.3,d.66.1.5	100762,100763
1fxxA	482	77.84	c.55.3.5	33726
1xkpC	143	77.94	d.198.1.1	122088
1uf3A	228	78.03	d.159.1.6	99317
2qedA	258	81.30		
1ro7A	259	85.08	c.130.1.1	97667
1s9uA	207	85.82	a.184.1.1	105390
2i75A	320	88.55		
1ql0A	241	88.98	d.4.1.2	37139
1qh5A	260	89.18	d.157.1.2	42057
2b0cA	206	89.69	c.108.1.2	127633