# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pliA	91	1.14e-09		
2plsA	86	1.32e-09		
2o1rA	81	1.41e-09		
2p13A	90	1.71e-09		
2r2zA	93	3.42e-09		
2nqwA	93	3.96e-09		
2p4pA	86	1.25e-08		
2rk5A	87	1.85e-08		
2oaiA	94	7.53e-08		
2p3hA	101	1.31e-07		
3ddjA	296	5.725		
1wviA	257	28.93	c.108.1.14	114915
1q77A	138	31.86	c.26.2.4	96023
1uzxA	169	36.25	d.20.1.2	100238
1ei7A	158	40.36	a.24.5.1	16584
1pbwA	216	42.12	a.116.1.1	19103
1qksA	567	43.91	a.3.1.2,b.70.2.1	15951,27710
3ce7A	107	46.25		
3ci3A	194	47.57		
1neeA	138	48.60	d.241.1.1,g.59.1.1	91841,91842
2qxfA	482	51.17		
2yvsA	219	55.70		
2b0cA	206	63.15	c.108.1.2	127633
1tx4A	198	74.67	a.116.1.1	19098
2pt0A	340	79.71		
1pa1A	310	86.17	c.45.1.2	94404