# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	5.42e-12		
2pliA	91	8.92e-12		
2p13A	90	1.72e-11		
2o1rA	81	1.96e-11		
2r2zA	93	2.54e-11		
2p4pA	86	4.84e-11		
2oaiA	94	1.00e-10		
2nqwA	93	1.39e-10		
2rk5A	87	2.25e-10		
2p3hA	101	1.00e-09		
3ddjA	296	0.7879		
1pbwA	216	8.302	a.116.1.1	19103
1neeA	138	25.64	d.241.1.1,g.59.1.1	91841,91842
2ovjA	201	35.18		
2g2kA	170	39.49		
2agmA	167	40.62		
2yvsA	219	40.91		
1wviA	257	48.81	c.108.1.14	114915
1tx4A	198	50.83	a.116.1.1	19098
1k1eA	180	62.23	c.108.1.5	67995
1r6jA	82	66.75	b.36.1.1	97151
3ce7A	107	67.30		
3ci3A	194	69.47		
2dkoA	146	72.58		
2pz4A	239	72.67		
1ahlA	49	72.80	g.9.1.1	44601
2riqA	160	78.56		
2pp6A	102	79.21		
2idxA	196	80.92