# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	3.05e-12		
2o1rA	81	7.91e-12		
2pliA	91	1.00e-11		
2p13A	90	2.51e-11		
2r2zA	93	5.08e-11		
2oaiA	94	3.58e-10		
2nqwA	93	3.58e-10		
2rk5A	87	3.07e-09		
2p3hA	101	3.86e-09		
2p4pA	86	5.12e-09		
1div	149	5.343		
1hskA	326	5.762	d.145.1.2,d.146.1.1	61241,61242
2f0xA	148	9.143	d.38.1.5	132673
2ov9A	216	9.610		
2qedA	258	10.10		
1xb2B	291	11.19	a.5.2.2,d.43.1.1,d.43.1.1	115057,115058,115059
1k6zA	141	11.43	d.198.1.1	68247
1p9yA	121	11.53	d.241.2.1	94402
1w1oA	534	11.72	d.58.32.4,d.145.1.1	109071,109072
2yvsA	219	12.03		
1jyaA	130	16.72	d.198.1.1	67453
1x2gA	337	17.12		
2j4jA	226	17.62		
2vfrA	422	19.24		
2shpA	525	20.91	c.45.1.2,d.93.1.1,d.93.1.1	32683,40533,40534
2a1fA	247	21.93	c.73.1.3	125991
2riqA	160	23.11		
1ad2A	228	23.12	e.24.1.1	43353
1o0iA	138	23.43	d.38.1.5	86532
2pp6A	102	24.70		
2yxyA	115	25.21		
1vkyA	347	26.33	e.53.1.1	108696
1qh5A	260	26.59	d.157.1.2	42057
1ybdA	239	30.93	c.73.1.3	122884
2bh1A	250	32.65	c.55.1.11,c.55.1.11	128506,128507
2h4uA	145	32.98	d.38.1.5	136082
1wluA	136	37.92	d.38.1.5	121015
2gagC	210	38.33		
1i8dA	213	38.50	b.43.4.3,b.43.4.3	61953,61954
1q4uA	151	38.65	d.38.1.5	95828
1at3A	247	39.71	b.57.1.1	27021
1vmeA	410	40.38	c.23.5.1,d.157.1.3	108893,108894
2otnA	308	40.85		
2fs2A	151	42.08	d.38.1.5	134003
1kzlA	208	42.72	b.43.4.3,b.43.4.3	77635,77636
1f0xA	571	44.31	d.58.32.2,d.145.1.1	39483,41746
2d74B	148	46.62		
2rghA	571	54.87		
1urjA	1136	55.88	e.58.1.1	113410
2blnA	305	56.00	b.46.1.1,c.65.1.1	128734,128735
1zd3A	555	56.43	c.108.1.2,c.69.1.11	124930,124931
2g2kA	170	59.43		
1yrkA	126	59.97		
1k3sA	113	60.94	d.198.1.1	68120
2iueA	212	61.25		
2izpA	303	61.30	a.250.1.1	137826
1gsjA	258	61.80	c.73.1.2	70397
1jyoA	130	62.19	d.198.1.1	67483
2obwA	258	64.47		
2bneA	241	66.61	c.73.1.3	128824
1fmtA	314	66.86	b.46.1.1,c.65.1.1	25758,34174
2it9A	127	69.14	d.18.1.3	137634
1zr6A	503	74.20		
2ngrB	234	75.06	a.116.1.1	19105
1j1yA	136	75.90	d.38.1.5	90776
1vqzA	341	77.31	d.224.1.3,d.104.1.3	120426,120427
1em2A	229	77.75	d.129.3.2	41321
1qyaA	307	78.77	d.21.1.2,d.21.1.2	104653,104654
1j83A	180	78.80	b.18.1.12	66430
2ipiA	521	81.11		
1wh0A	134	82.69	b.15.1.3	114628
1lurA	339	83.48	b.30.5.4	84717
2p18A	311	83.93		
1a1rA	198	86.52	b.47.1.3	26406
2a9dA	372	86.93	b.1.18.6,d.176.1.1	126431,126432
3nul	130	87.06		
2exrA	524	87.47		
1q42A	201	87.95	d.17.4.2	95776