# List of top-scoring protein chains for TR453.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2p4pA	86	7.56e-08		
2plsA	86	7.64e-08		
2nqwA	93	2.11e-07		
2oaiA	94	2.22e-07		
2o1rA	81	3.37e-07		
2pliA	91	1.14e-06		
2o3gA	92	1.27e-06		
2p13A	90	1.50e-06		
2r2zA	93	4.10e-06		
2p3hA	101	0.000502		
2rk5A	87	0.000739		
2r6fA	972	15.30		
2nrlA	147	19.84		
2fztA	79	23.52	a.46.3.1	134476
1q98A	165	24.33	c.47.1.10	96253
1mytA	146	38.29	a.1.1.2	15207
1lujB	75	40.09	a.161.1.1	78226
1hjxA	362	40.80	c.1.8.5,d.26.3.1	83512,83513
1fxiA	96	44.18	d.15.4.1	37664
1x4wA	67	58.39		
1m1eB	81	86.82	a.161.1.1	78400