# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	4.02e-11		
2p4pA	86	5.75e-11		
2r2zA	93	1.13e-10		
2p13A	90	1.40e-10		
2pliA	91	1.55e-10		
2o1rA	81	1.73e-10		
2nqwA	93	3.04e-10		
2oaiA	94	6.56e-10		
2rk5A	87	1.17e-09		
2p3hA	101	3.00e-08		
1ei7A	158	0.2771	a.24.5.1	16584
2vfrA	422	1.093		
1pbwA	216	2.155	a.116.1.1	19103
2pp6A	102	2.365		
1pn0A	665	3.186	c.3.1.2,c.47.1.10,d.16.1.2	94918,94919,94920
1hskA	326	4.329	d.145.1.2,d.146.1.1	61241,61242
1w24A	182	6.171	d.159.1.7	120579
2bvfA	459	7.193		
1wvfA	520	7.871	d.58.32.1,d.145.1.1	121337,121338
1l0iA	78	18.62	a.28.1.1	77643
1zr6A	503	19.09		
1uxy	340	22.28		
2qxfA	482	22.71		
2yvsA	219	23.46		
1f0kA	364	26.89	c.87.1.2	35465
2ipiA	521	28.06		
2gcuA	245	28.85		
3ddyA	186	30.19		
2qv2A	342	30.56		
1kzlA	208	32.33	b.43.4.3,b.43.4.3	77635,77636
2obwA	258	33.04		
1n62B	809	33.46	d.41.1.1,d.133.1.1	80092,80093
1c02A	166	34.13	a.24.10.2	16633
1tt0A	623	34.78		
2uuuA	584	35.45		
2d74B	148	35.58		
2qedA	258	35.68		
2i0kA	561	37.70		
1t8kA	77	42.94	a.28.1.1	106666
1i8dA	213	43.35	b.43.4.3,b.43.4.3	61953,61954
2pt7A	330	46.77		
2p18A	311	46.85		
1e8gA	560	47.22	d.58.32.1,d.145.1.1	39455,41718
1nd6A	354	47.64	c.60.1.2	80407
2blfA	373	57.05		
2dkoA	146	63.30		
3ce7A	107	63.88		
1f80D	81	65.25	a.28.1.1	59686
1zjjA	263	65.59		
2cx4A	164	66.18	c.47.1.10	130973
1fm0D	81	69.26	d.15.3.1	37642
1dhr	241	71.02		
2bmaA	470	74.08		
2gf3A	389	75.18	c.3.1.2,d.16.1.3	135070,135071
1v10A	521	76.08	b.6.1.3,b.6.1.3,b.6.1.3	108224,108225,108226
1p9kA	79	79.06	d.66.1.6	94392
1j83A	180	81.00	b.18.1.12	66430
2c4nA	250	81.61	c.108.1.14	129837
2amwA	83	81.86		
2ngrB	234	83.33	a.116.1.1	19105
2giaB	187	84.95	d.18.1.4	135222
2gmnA	274	85.19		
1giqA	413	89.16	d.166.1.1,d.166.1.1	76224,76225