# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2plsA 86 2.27e-12 2p13A 90 2.63e-12 2pliA 91 8.76e-12 2o1rA 81 1.20e-11 2oaiA 94 1.99e-11 2r2zA 93 2.13e-11 2p4pA 86 5.57e-11 2nqwA 93 8.31e-11 2rk5A 87 2.89e-10 2p3hA 101 4.91e-09 1ei7A 158 0.5658 a.24.5.1 16584 2pp6A 102 1.304 2vfrA 422 1.665 1y8cA 246 2.417 c.66.1.43 116563 2obwA 258 3.177 1w24A 182 4.050 d.159.1.7 120579 2bvfA 459 4.226 1l0iA 78 6.330 a.28.1.1 77643 2qedA 258 7.216 1kzlA 208 7.825 b.43.4.3,b.43.4.3 77635,77636 3ddyA 186 8.046 1pbwA 216 8.943 a.116.1.1 19103 2qxfA 482 10.80 3ce7A 107 10.94 1wvfA 520 11.90 d.58.32.1,d.145.1.1 121337,121338 1hskA 326 12.24 d.145.1.2,d.146.1.1 61241,61242 1f80D 81 12.25 a.28.1.1 59686 1zr6A 503 12.35 1i8dA 213 13.69 b.43.4.3,b.43.4.3 61953,61954 2gcuA 245 14.10 2d74B 148 15.61 1t8kA 77 16.87 a.28.1.1 106666 1xm8A 254 17.50 d.157.1.2 115475 1j83A 180 21.88 b.18.1.12 66430 2c4nA 250 24.34 c.108.1.14 129837 1c02A 166 24.43 a.24.10.2 16633 3cwiA 78 25.25 2ipiA 521 26.75 1vioA 243 27.23 d.265.1.3,d.66.1.5 100762,100763 2cx4A 164 27.71 c.47.1.10 130973 1tygB 87 28.90 d.15.3.2 107455 1pn0A 665 29.34 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2je0A 149 29.69 2p18A 311 31.20 1v10A 521 32.70 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 2uuuA 584 34.70 2g2kA 170 38.44 2ev0A 142 38.69 a.4.5.24,a.76.1.1 132413,132414 2gmnA 274 38.93 1dhr 241 38.94 2qnwA 82 38.95 2a4vA 159 39.05 c.47.1.10 126163 2aioA 269 40.19 d.157.1.1 126829 1vkuA 100 40.98 a.28.1.1 108690 2o0tA 467 42.50 2blfA 373 43.12 2ywnA 157 44.54 1zjjA 263 44.95 1w94A 156 45.08 c.51.1.2 120774 1ev7A 317 46.21 c.52.1.9 33315 2p7jA 287 47.15 1fm0D 81 47.30 d.15.3.1 37642 2gfiA 458 49.11 1zpuA 534 50.73 1hfuA 503 50.98 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1ryjA 70 51.30 d.15.3.2 98104 1vpzA 73 51.32 b.151.1.1 113998 1s8eA 333 51.58 d.159.1.4 105368 2yvsA 219 53.50 2btiA 63 53.68 1vmeA 410 55.68 c.23.5.1,d.157.1.3 108893,108894 1iwmA 186 56.15 b.125.1.2 83758 1qh5A 260 59.96 d.157.1.2 42057 1of8A 370 60.06 c.1.10.4 92819 2i0kA 561 60.85 2ehsA 77 62.43 1smtA 122 62.65 a.4.5.5 16109 1vjrA 271 64.44 c.108.1.14 100832 2hrgA 496 67.80 2bszA 278 67.80 d.3.1.5 129131 2g7uA 257 67.84 2f2eA 146 67.96 a.4.5.69 132808 1e8gA 560 68.25 d.58.32.1,d.145.1.1 39455,41718 1gx3A 284 69.09 d.3.1.5 70678 1a65A 504 69.26 b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 1r1tA 122 70.86 a.4.5.5 104769 1xmxA 385 71.25 c.52.1.26 115568 2ywdA 191 73.10 2ia2A 265 73.74 1sdjA 310 74.95 d.21.1.2,d.21.1.2 98807,98808 2fhxA 246 75.18 1rroA 108 75.31 a.39.1.4 17195 2oauA 306 76.49 b.38.1.3,d.58.43.1,f.34.1.1 138978,138979,138980 1e3dA 266 76.66 e.19.1.1 59188 2zhgA 154 77.62 1ed7A 45 78.14 b.72.2.1 27809 1r1uA 106 79.03 a.4.5.5 104771 1xv2A 237 79.67 d.290.1.1 116076 4cpvA 108 80.65 a.39.1.4 17198 1lu4A 136 80.87 c.47.1.10 91124 2qt6A 498 83.99 2nocA 99 84.87 1jmcA 246 84.90 b.40.4.3,b.40.4.3 25300,25301