# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	2.29e-11		
2p13A	90	3.47e-11		
2pliA	91	3.48e-11		
2o1rA	81	6.95e-11		
2p4pA	86	8.62e-11		
2r2zA	93	1.04e-10		
2oaiA	94	1.17e-10		
2nqwA	93	6.75e-10		
2rk5A	87	2.25e-09		
2p3hA	101	3.02e-08		
1ei7A	158	0.1990	a.24.5.1	16584
1pbwA	216	2.335	a.116.1.1	19103
2pp6A	102	2.531		
2vfrA	422	2.562		
1w24A	182	7.572	d.159.1.7	120579
2bvfA	459	8.083		
1zr6A	503	10.38		
1hskA	326	10.85	d.145.1.2,d.146.1.1	61241,61242
1wvfA	520	12.89	d.58.32.1,d.145.1.1	121337,121338
1l0iA	78	16.16	a.28.1.1	77643
2bmaA	470	19.16		
2qxfA	482	19.45		
2gcuA	245	22.36		
2ipiA	521	22.92		
1pn0A	665	23.62	c.3.1.2,c.47.1.10,d.16.1.2	94918,94919,94920
2ngrB	234	27.73	a.116.1.1	19105
1f0kA	364	30.22	c.87.1.2	35465
1uf5A	303	30.85	d.160.1.2	107808
2qv2A	342	33.30		
3ddyA	186	33.69		
1t8kA	77	35.18	a.28.1.1	106666
1fm0D	81	37.48	d.15.3.1	37642
1vioA	243	38.70	d.265.1.3,d.66.1.5	100762,100763
1tt0A	623	40.93		
2q8nA	460	42.38		
2c4nA	250	43.61	c.108.1.14	129837
2ovjA	201	44.05		
2obwA	258	44.17		
2gmnA	274	44.89		
1n1cA	217	45.32	a.184.1.1	85254
2qedA	258	47.30		
1p9kA	79	49.82	d.66.1.6	94392
1c02A	166	50.22	a.24.10.2	16633
1kzlA	208	51.20	b.43.4.3,b.43.4.3	77635,77636
2p18A	311	55.05		
1i8dA	213	56.41	b.43.4.3,b.43.4.3	61953,61954
1tygB	87	57.79	d.15.3.2	107455
1nd6A	354	58.97	c.60.1.2	80407
2yvsA	219	59.16		
1e8gA	560	63.09	d.58.32.1,d.145.1.1	39455,41718
2cx4A	164	64.38	c.47.1.10	130973
2btzA	394	65.58		
2od0A	105	66.52		
1zjjA	263	67.57		
3bjhA	119	69.08		
1s9uA	207	75.13	a.184.1.1	105390
2d74B	148	79.72		
1v8cA	168	80.62	d.15.3.1,d.129.5.1	100495,100496
2pt0A	340	80.74		
2fgsA	179	81.51		
2giaB	187	84.27	d.18.1.4	135222
2r6zA	258	85.04		
1erzA	303	85.60	d.160.1.2	59498
2dxcB	157	87.72		
2ywnA	157	88.14