# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	1.03e-11		
2pliA	91	1.50e-11		
2p4pA	86	1.79e-11		
2p13A	90	1.91e-11		
2o1rA	81	4.08e-11		
2r2zA	93	4.94e-11		
2oaiA	94	7.31e-11		
2nqwA	93	4.37e-10		
2rk5A	87	7.07e-10		
2p3hA	101	1.44e-08		
1ei7A	158	0.1528	a.24.5.1	16584
1pbwA	216	1.863	a.116.1.1	19103
2vfrA	422	2.511		
2pp6A	102	4.390		
1w24A	182	8.905	d.159.1.7	120579
2bvfA	459	10.11		
1l0iA	78	12.70	a.28.1.1	77643
1wvfA	520	13.94	d.58.32.1,d.145.1.1	121337,121338
2qxfA	482	15.78		
1pn0A	665	18.12	c.3.1.2,c.47.1.10,d.16.1.2	94918,94919,94920
2qv2A	342	19.42		
1f0kA	364	19.70	c.87.1.2	35465
1fm0D	81	20.78	d.15.3.1	37642
1zr6A	503	21.45		
2ipiA	521	22.20		
1hskA	326	22.52	d.145.1.2,d.146.1.1	61241,61242
2gcuA	245	22.56		
2ngrB	234	22.87	a.116.1.1	19105
1t8kA	77	31.04	a.28.1.1	106666
2ovjA	201	31.08		
2c4nA	250	32.50	c.108.1.14	129837
2bmaA	470	34.13		
1n1cA	217	38.68	a.184.1.1	85254
2q8nA	460	42.75		
1zjjA	263	44.44		
1c02A	166	48.58	a.24.10.2	16633
1tygB	87	49.60	d.15.3.2	107455
1s9uA	207	51.04	a.184.1.1	105390
1uf5A	303	51.68	d.160.1.2	107808
1e8gA	560	52.14	d.58.32.1,d.145.1.1	39455,41718
2yvsA	219	52.42		
2obwA	258	53.64		
2cx4A	164	55.55	c.47.1.10	130973
2p18A	311	57.10		
1tt0A	623	60.64		
3bjhA	119	63.81		
2osaA	202	65.72		
1eb6A	177	66.18	d.92.1.12	64895
2qedA	258	66.63		
2fgsA	179	71.68		
2od0A	105	74.43		
2i0kA	561	78.40		
2dxcB	157	80.67		
1v8cA	168	80.92	d.15.3.1,d.129.5.1	100495,100496
2yw2A	424	82.15		
1vioA	243	83.35	d.265.1.3,d.66.1.5	100762,100763
1zkdA	387	85.32	c.66.1.52	125184
2ywnA	157	86.21		
2czlA	272	86.30	c.94.1.1	131055
2pt0A	340	86.95