# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	3.55e-13		
2pliA	91	5.63e-13		
2p13A	90	6.65e-13		
2p4pA	86	8.47e-13		
2o1rA	81	1.61e-12		
2r2zA	93	1.99e-12		
2oaiA	94	3.00e-12		
2nqwA	93	2.83e-11		
2rk5A	87	4.46e-11		
2p3hA	101	1.65e-09		
1ei7A	158	0.1342	a.24.5.1	16584
2vfrA	422	1.715		
1pbwA	216	2.491	a.116.1.1	19103
2pp6A	102	2.525		
1w24A	182	4.232	d.159.1.7	120579
2bvfA	459	6.331		
1wvfA	520	9.016	d.58.32.1,d.145.1.1	121337,121338
2bmaA	470	11.66		
1l0iA	78	15.16	a.28.1.1	77643
1zr6A	503	15.47		
1hskA	326	18.48	d.145.1.2,d.146.1.1	61241,61242
2ipiA	521	20.58		
1f0kA	364	20.84	c.87.1.2	35465
2gcuA	245	21.31		
1uf5A	303	25.24	d.160.1.2	107808
1pn0A	665	30.33	c.3.1.2,c.47.1.10,d.16.1.2	94918,94919,94920
1tt0A	623	31.46		
1vioA	243	33.47	d.265.1.3,d.66.1.5	100762,100763
2c4nA	250	33.63	c.108.1.14	129837
2cx4A	164	35.21	c.47.1.10	130973
2ngrB	234	35.61	a.116.1.1	19105
1t8kA	77	37.40	a.28.1.1	106666
1c02A	166	37.84	a.24.10.2	16633
2qxfA	482	40.50		
1tygB	87	44.61	d.15.3.2	107455
1nd6A	354	45.67	c.60.1.2	80407
1n1cA	217	45.85	a.184.1.1	85254
1ahlA	49	47.47	g.9.1.1	44601
2exrA	524	47.62		
2pt0A	340	47.72		
2yw2A	424	47.93		
1n62B	809	48.32	d.41.1.1,d.133.1.1	80092,80093
1zjjA	263	50.38		
1fm0D	81	51.86	d.15.3.1	37642
2q8nA	460	52.19		
2qv2A	342	55.86		
2gmnA	274	55.90		
2ovjA	201	57.23		
1r6jA	82	61.62	b.36.1.1	97151
2ywnA	157	65.39		
1s9uA	207	70.26	a.184.1.1	105390
2r6zA	258	71.73		
1p9kA	79	73.97	d.66.1.6	94392
2p18A	311	74.39		
1y8cA	246	75.55	c.66.1.43	116563
1vjnA	220	77.24	d.157.1.4	100825
1erzA	303	77.61	d.160.1.2	59498
2fgsA	179	78.24		
2ey4C	82	78.27	b.43.3.5	132582
1e8gA	560	79.24	d.58.32.1,d.145.1.1	39455,41718
1uzxA	169	80.63	d.20.1.2	100238
3cwiA	78	81.48		
2btzA	394	81.69		
2yvsA	219	84.46