# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	2.58e-10		
2pliA	91	4.20e-10		
2p13A	90	1.09e-09		
2o1rA	81	1.34e-09		
2p4pA	86	1.42e-09		
2r2zA	93	1.68e-09		
2oaiA	94	5.69e-09		
2rk5A	87	9.12e-09		
2nqwA	93	1.22e-08		
2p3hA	101	2.74e-07		
1ei7A	158	0.8810	a.24.5.1	16584
2pp6A	102	4.811		
2qxfA	482	5.201		
2ngrB	234	16.43	a.116.1.1	19105
1fm0D	81	16.60	d.15.3.1	37642
2vfrA	422	20.08		
1pbwA	216	21.16	a.116.1.1	19103
1tx4A	198	21.97	a.116.1.1	19098
2p18A	311	23.10		
1tt0A	623	34.88		
3byiA	214	40.74		
1a1aA	107	41.62	d.93.1.1	40449
2osaA	202	43.70		
2dkoA	146	44.56		
2d74B	148	44.78		
1neeA	138	45.09	d.241.1.1,g.59.1.1	91841,91842
2ovjA	201	46.86		
2dxcB	157	48.74		
2bvfA	459	49.33		
2riqA	160	51.81		
2nt8A	223	52.55		
1wvfA	520	54.01	d.58.32.1,d.145.1.1	121337,121338
2fgsA	179	57.66		
2g2kA	170	58.60		
2o3aA	178	60.87		
3ce7A	107	60.92		
1smtA	122	62.30	a.4.5.5	16109
3ci3A	194	63.81		
1l0iA	78	64.33	a.28.1.1	77643
2uuuA	584	72.78		
2z0dB	125	80.33	d.15.1.3	140096
1tibA	269	80.64	c.69.1.17	34738
2r2qA	110	86.37		
1zjjA	263	86.38		
1qfxA	460	88.94	c.60.1.2	33994