# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	1.53e-09		
2p13A	90	1.68e-09		
2pliA	91	2.15e-09		
2r2zA	93	2.18e-09		
2nqwA	93	2.92e-09		
2o1rA	81	7.23e-09		
2p4pA	86	8.23e-09		
2rk5A	87	2.16e-08		
2oaiA	94	2.52e-08		
2p3hA	101	2.06e-07		
1ei7A	158	0.3289	a.24.5.1	16584
1pbwA	216	2.983	a.116.1.1	19103
2vfrA	422	4.203		
2pp6A	102	5.650		
1hskA	326	8.697	d.145.1.2,d.146.1.1	61241,61242
2qxfA	482	10.97		
1w24A	182	11.35	d.159.1.7	120579
2bvfA	459	12.63		
2bmaA	470	13.20		
1pn0A	665	15.00	c.3.1.2,c.47.1.10,d.16.1.2	94918,94919,94920
1wvfA	520	17.58	d.58.32.1,d.145.1.1	121337,121338
1l0iA	78	19.32	a.28.1.1	77643
1uf5A	303	22.40	d.160.1.2	107808
1fm0D	81	31.02	d.15.3.1	37642
1t8kA	77	34.96	a.28.1.1	106666
3ddyA	186	36.07		
1f0kA	364	38.00	c.87.1.2	35465
2gcuA	245	38.65		
1kzlA	208	40.28	b.43.4.3,b.43.4.3	77635,77636
1tt0A	623	43.33		
1c02A	166	47.94	a.24.10.2	16633
1f80D	81	49.88	a.28.1.1	59686
2c4nA	250	52.70	c.108.1.14	129837
2fgsA	179	54.11		
2p18A	311	55.61		
1vioA	243	57.84	d.265.1.3,d.66.1.5	100762,100763
1n62B	809	58.01	d.41.1.1,d.133.1.1	80092,80093
2d74B	148	59.56		
1erzA	303	60.80	d.160.1.2	59498
2giaB	187	63.10	d.18.1.4	135222
2yvsA	219	63.87		
2qv2A	342	69.37		
2ngrB	234	73.70	a.116.1.1	19105
2cx4A	164	74.96	c.47.1.10	130973
1e8gA	560	75.62	d.58.32.1,d.145.1.1	39455,41718
1zjjA	263	75.76		
2ywnA	157	76.99		
1i8dA	213	78.54	b.43.4.3,b.43.4.3	61953,61954
1tygB	87	79.43	d.15.3.2	107455
1w5rA	278	84.20	d.3.1.5	120643
2qedA	258	86.89		
3cwiA	78	88.53		
1r6jA	82	89.02	b.36.1.1	97151