# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p4pA 86 3.16e-14 2plsA 86 1.22e-13 2p13A 90 1.43e-13 2pliA 91 1.73e-13 2r2zA 93 3.66e-13 2o1rA 81 5.53e-13 2oaiA 94 2.48e-12 2nqwA 93 4.69e-12 2rk5A 87 1.12e-11 2p3hA 101 6.38e-10 1ei7A 158 0.09020 a.24.5.1 16584 2vfrA 422 0.2701 1tt0A 623 0.3987 1yarA 233 1.005 d.153.1.4 122837 1pbwA 216 1.367 a.116.1.1 19103 2gf3A 389 1.698 c.3.1.2,d.16.1.3 135070,135071 1w24A 182 2.039 d.159.1.7 120579 3c3dA 311 2.184 2bmaA 470 4.506 1hs6A 611 6.061 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2pp6A 102 7.074 2hxvA 360 7.235 c.71.1.2,c.97.1.2 136859,136860 1lpjA 133 7.954 b.60.1.2 78123 1uf5A 303 10.31 d.160.1.2 107808 2ihoA 293 11.37 1v10A 521 11.57 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1eb6A 177 11.84 d.92.1.12 64895 1jlwA 219 12.59 a.45.1.1,c.47.1.5 71741,71742 2hrgA 496 14.27 1bifA 469 16.68 c.37.1.7,c.60.1.4 31961,34003 2oh5A 248 17.36 2p6yA 142 18.92 1l0iA 78 19.01 a.28.1.1 77643 2vgaA 207 19.48 2eyuA 261 19.67 2qedA 258 21.71 2gcuA 245 21.77 1e3dA 266 21.81 e.19.1.1 59188 1hskA 326 23.23 d.145.1.2,d.146.1.1 61241,61242 1yu6A 275 23.50 c.41.1.1 124040 2obwA 258 23.72 2gmnA 274 23.75 1ep3B 262 25.08 b.43.4.2,c.25.1.3 25664,31554 2cx4A 164 26.22 c.47.1.10 130973 1xbfA 140 26.24 d.273.1.1 109538 1el5A 389 26.31 c.3.1.2,d.16.1.3 30369,37937 1fm0D 81 26.81 d.15.3.1 37642 1p9kA 79 29.81 d.66.1.6 94392 2pt0A 340 30.37 1zmbA 290 32.90 c.23.10.7 125355 1erzA 303 33.10 d.160.1.2 59498 2hhjA 267 33.10 c.60.1.1 136497 2p18A 311 33.27 3c8wA 255 33.70 2g9zA 348 34.27 2qxfA 482 34.66 1y7lA 316 35.03 c.79.1.1 122695 1e58A 249 35.29 c.60.1.1 59262 2d80A 318 35.87 1neeA 138 39.01 d.241.1.1,g.59.1.1 91841,91842 2nq5A 755 41.20 1t8kA 77 44.39 a.28.1.1 106666 2zceA 291 44.43 1x3zB 72 44.43 a.189.1.1 121674 1gl6A 436 45.44 c.37.1.11 70259 1p42A 270 45.49 d.14.1.7,d.14.1.7 87754,87755 2p5qA 170 45.53 1qwzA 235 47.27 b.100.1.1 96510 1h09A 338 47.27 b.109.1.1,c.1.8.8 83420,83421 1qh4A 380 47.45 a.83.1.1,d.128.1.2 18462,41197 1fcjA 322 47.64 c.79.1.1 35289 1h8gA 95 48.15 b.109.1.1 65735 1c02A 166 50.05 a.24.10.2 16633 3c8mA 331 50.57 1enp 312 51.65 1y8cA 246 52.68 c.66.1.43 116563 1z7yA 322 52.92 c.79.1.1 124679 2ngrB 234 55.31 a.116.1.1 19105 2bvfA 459 56.43 2q8nA 460 57.57 1k0rA 366 58.38 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 1qhfA 240 58.59 c.60.1.1 33960 1s62A 106 59.29 d.212.1.1 118874 2vdjA 301 59.55 7aatA 401 60.12 c.67.1.1 34250 2blfA 373 60.18 2b30A 301 60.36 c.108.1.10 127759 1w1kA 560 61.33 d.58.32.1,d.145.1.1 109059,109060 1w5rA 278 61.86 d.3.1.5 120643 1zjjA 263 64.31 2ywdA 191 65.28 1w1oA 534 65.53 d.58.32.4,d.145.1.1 109071,109072 1an9A 340 66.67 c.4.1.2,d.16.1.3 30617,37904 1o97C 264 66.75 c.26.2.3 81232 1vmhA 144 67.20 d.273.1.1 113677 1olzA 663 68.14 b.1.1.4,b.69.12.1,g.16.2.1 93341,93342,93343 1tvgA 153 68.70 b.18.1.9 112683 2yvsA 219 68.80 2ywiA 196 68.96 1f80D 81 70.43 a.28.1.1 59686 2uuuA 584 71.71 1xf1A 926 71.82 2isnA 364 71.88 1erjA 393 72.40 b.69.4.1 27660 1wdiA 345 73.58 e.53.1.1 114535 3c0bA 334 75.70 1x2gA 337 75.99 1r6jA 82 76.84 b.36.1.1 97151 1gegA 256 76.94 c.2.1.2 29888 1lniA 96 77.47 d.1.1.2 74046 2a74A 643 77.85 2asbA 251 78.18 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 2f57A 317 78.93 1kwnA 207 80.26 b.25.1.1 77568 2q4wA 524 82.23 1ftpA 133 82.57 b.60.1.2 27199 1mdcA 131 82.83 b.60.1.2 27198 1heiA 451 84.09 c.37.1.14,c.37.1.14 32463,32464 1ofgA 381 85.06 c.2.1.3,d.81.1.5 30064,39979 1tygB 87 86.47 d.15.3.2 107455 2yxxA 386 86.67 1bgpA 309 86.83 a.93.1.1 18690 1qsgA 265 87.39 c.2.1.2 29935 1n0wA 243 88.39 c.37.1.11 79772 2dsnA 387 88.64 1twyA 290 89.35 c.94.1.1 112767