# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	5.72e-10		
2p13A	90	6.79e-10		
2r2zA	93	1.14e-09		
2p4pA	86	1.26e-09		
2nqwA	93	1.28e-09		
2pliA	91	1.40e-09		
2o1rA	81	3.53e-09		
2rk5A	87	1.35e-08		
2oaiA	94	1.38e-08		
2p3hA	101	9.31e-08		
1ei7A	158	0.1947	a.24.5.1	16584
1pbwA	216	1.651	a.116.1.1	19103
2vfrA	422	1.988		
1hskA	326	4.204	d.145.1.2,d.146.1.1	61241,61242
1w24A	182	7.739	d.159.1.7	120579
2qxfA	482	8.525		
2bvfA	459	9.614		
2pp6A	102	10.34		
1pn0A	665	11.25	c.3.1.2,c.47.1.10,d.16.1.2	94918,94919,94920
2bmaA	470	12.84		
1l0iA	78	17.13	a.28.1.1	77643
1wvfA	520	17.59	d.58.32.1,d.145.1.1	121337,121338
1f0kA	364	17.72	c.87.1.2	35465
1fm0D	81	28.64	d.15.3.1	37642
2qv2A	342	28.90		
2ngrB	234	31.31	a.116.1.1	19105
1t8kA	77	35.11	a.28.1.1	106666
1uf5A	303	36.45	d.160.1.2	107808
2yvsA	219	37.21		
1uxy	340	38.52		
2q8nA	460	39.80		
2gcuA	245	42.14		
2ovjA	201	45.11		
1c02A	166	46.62	a.24.10.2	16633
1tt0A	623	48.88		
1n62B	809	50.83	d.41.1.1,d.133.1.1	80092,80093
2i0kA	561	51.70		
2c4nA	250	51.70	c.108.1.14	129837
1zjjA	263	59.17		
1f80D	81	59.84	a.28.1.1	59686
1r6jA	82	67.32	b.36.1.1	97151
2fgsA	179	74.82		
2d74B	148	75.39		
1e8gA	560	80.45	d.58.32.1,d.145.1.1	39455,41718
1n1cA	217	80.96	a.184.1.1	85254
2giaB	187	82.33	d.18.1.4	135222
2p18A	311	82.47		
1kzlA	208	84.83	b.43.4.3,b.43.4.3	77635,77636
2cx4A	164	85.69	c.47.1.10	130973
1x3zB	72	88.24	a.189.1.1	121674