# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	1.84e-11		
2p4pA	86	1.99e-11		
2p13A	90	4.00e-11		
2pliA	91	4.30e-11		
2r2zA	93	5.52e-11		
2nqwA	93	8.55e-11		
2o1rA	81	8.58e-11		
2rk5A	87	3.65e-10		
2oaiA	94	4.94e-10		
2p3hA	101	9.77e-09		
1ei7A	158	0.1431	a.24.5.1	16584
1pbwA	216	1.478	a.116.1.1	19103
2vfrA	422	2.248		
2pp6A	102	5.825		
1w24A	182	7.295	d.159.1.7	120579
2bvfA	459	10.96		
2bmaA	470	12.81		
1wvfA	520	15.74	d.58.32.1,d.145.1.1	121337,121338
1hskA	326	17.76	d.145.1.2,d.146.1.1	61241,61242
1pn0A	665	18.94	c.3.1.2,c.47.1.10,d.16.1.2	94918,94919,94920
1tt0A	623	22.09		
1uf5A	303	23.33	d.160.1.2	107808
1l0iA	78	23.53	a.28.1.1	77643
2qxfA	482	29.08		
1fm0D	81	31.65	d.15.3.1	37642
2cx4A	164	33.85	c.47.1.10	130973
1f0kA	364	34.67	c.87.1.2	35465
2ngrB	234	37.86	a.116.1.1	19105
2gcuA	245	41.40		
2qv2A	342	43.13		
1n62B	809	45.72	d.41.1.1,d.133.1.1	80092,80093
1vioA	243	47.10	d.265.1.3,d.66.1.5	100762,100763
1c02A	166	48.47	a.24.10.2	16633
2pt7A	330	49.74		
1erzA	303	57.12	d.160.1.2	59498
1t8kA	77	62.28	a.28.1.1	106666
1vk8A	106	63.74	d.58.48.1	108636
2ovjA	201	65.39		
1f80D	81	66.26	a.28.1.1	59686
2oyrA	258	66.74		
2q8nA	460	68.27		
2ywnA	157	70.75		
1tygB	87	70.89	d.15.3.2	107455
3ce7A	107	71.70		
2ipiA	521	73.47		
2yvsA	219	76.91		
1p9kA	79	83.41	d.66.1.6	94392
1ahlA	49	83.63	g.9.1.1	44601
2obwA	258	88.47		
1r6jA	82	89.94	b.36.1.1	97151