# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2p13A	90	1.58e-11		
2plsA	86	2.02e-11		
2o1rA	81	3.19e-11		
2p4pA	86	4.02e-11		
2pliA	91	4.52e-11		
2r2zA	93	5.18e-11		
2nqwA	93	8.81e-11		
2oaiA	94	2.00e-10		
2rk5A	87	3.95e-10		
2p3hA	101	8.82e-09		
1ei7A	158	0.2287	a.24.5.1	16584
2pp6A	102	2.666		
1pbwA	216	2.719	a.116.1.1	19103
2vfrA	422	3.652		
2qxfA	482	7.730		
2bvfA	459	8.520		
1l0iA	78	9.330	a.28.1.1	77643
1wvfA	520	10.12	d.58.32.1,d.145.1.1	121337,121338
1w24A	182	11.36	d.159.1.7	120579
1hskA	326	22.24	d.145.1.2,d.146.1.1	61241,61242
1f0kA	364	23.89	c.87.1.2	35465
2cx4A	164	24.20	c.47.1.10	130973
2qv2A	342	24.34		
1t8kA	77	24.42	a.28.1.1	106666
3ce7A	107	27.39		
1c02A	166	27.80	a.24.10.2	16633
1f80D	81	28.91	a.28.1.1	59686
2q8nA	460	31.19		
1tt0A	623	32.87		
1uf5A	303	40.24	d.160.1.2	107808
2d74B	148	41.51		
1pn0A	665	42.92	c.3.1.2,c.47.1.10,d.16.1.2	94918,94919,94920
3ddyA	186	44.87		
2gcuA	245	49.16		
2bmaA	470	49.21		
2ywnA	157	49.43		
1zjjA	263	55.71		
1kzlA	208	56.17	b.43.4.3,b.43.4.3	77635,77636
2qnwA	82	58.79		
1vkuA	100	59.94	a.28.1.1	108690
1n1cA	217	61.63	a.184.1.1	85254
2czlA	272	64.62	c.94.1.1	131055
1x3zB	72	64.79	a.189.1.1	121674
2ipiA	521	66.67		
1fm0D	81	67.65	d.15.3.1	37642
2ngrB	234	68.61	a.116.1.1	19105
2yvsA	219	68.91		
2dkoA	146	69.27		
2qedA	258	70.11		
1s8eA	333	71.93	d.159.1.4	105368
1vioA	243	72.33	d.265.1.3,d.66.1.5	100762,100763
1y8cA	246	72.77	c.66.1.43	116563
2i5nH	258	75.01	b.41.1.1,f.23.10.1	137064,137065
2c4nA	250	77.65	c.108.1.14	129837
2nocA	99	78.70		
1tygB	87	80.59	d.15.3.2	107455
1nd6A	354	80.73	c.60.1.2	80407
2je0A	149	81.61		
2g2kA	170	82.88		
2obwA	258	83.04		
2ovjA	201	85.53		
2dxcB	157	86.25