# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	4.71e-11		
2p4pA	86	8.93e-11		
2p13A	90	8.96e-11		
2pliA	91	9.73e-11		
2o1rA	81	1.43e-10		
2r2zA	93	1.70e-10		
2nqwA	93	5.88e-10		
2oaiA	94	9.81e-10		
2rk5A	87	1.28e-09		
2p3hA	101	2.50e-08		
1ei7A	158	0.2863	a.24.5.1	16584
1pbwA	216	2.026	a.116.1.1	19103
2vfrA	422	4.089		
2pp6A	102	5.875		
1w24A	182	7.713	d.159.1.7	120579
2bvfA	459	9.222		
1l0iA	78	13.68	a.28.1.1	77643
2qxfA	482	13.97		
1hskA	326	15.51	d.145.1.2,d.146.1.1	61241,61242
1wvfA	520	17.51	d.58.32.1,d.145.1.1	121337,121338
1pn0A	665	17.51	c.3.1.2,c.47.1.10,d.16.1.2	94918,94919,94920
2bmaA	470	20.32		
2gcuA	245	23.58		
1tt0A	623	26.95		
1vioA	243	29.78	d.265.1.3,d.66.1.5	100762,100763
1fm0D	81	29.92	d.15.3.1	37642
1c02A	166	30.29	a.24.10.2	16633
2obwA	258	33.37		
1f0kA	364	33.38	c.87.1.2	35465
3ce7A	107	35.93		
1t8kA	77	36.00	a.28.1.1	106666
2ipiA	521	37.80		
2qedA	258	38.69		
1f80D	81	38.84	a.28.1.1	59686
2d74B	148	43.18		
1tygB	87	44.00	d.15.3.2	107455
1uf5A	303	46.41	d.160.1.2	107808
1dhr	241	46.67		
1zjjA	263	53.20		
2qv2A	342	54.46		
2yvsA	219	54.87		
2ngrB	234	55.71	a.116.1.1	19105
3ddyA	186	60.67		
1x3zB	72	63.44	a.189.1.1	121674
2p18A	311	69.19		
1nd6A	354	69.84	c.60.1.2	80407
2dxcB	157	70.98		
2q8nA	460	72.13		
1ro7A	259	72.14	c.130.1.1	97667
1zr6A	503	77.12		
1q77A	138	78.48	c.26.2.4	96023
2cx4A	164	81.88	c.47.1.10	130973
2qnwA	82	83.32		
1kzlA	208	86.37	b.43.4.3,b.43.4.3	77635,77636
1rfs	139	86.73		
2ywdA	191	87.99		
1g12A	167	88.03	d.92.1.12	60193
1y8cA	246	89.61	c.66.1.43	116563