# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2pliA	91	3.41e-09		
2plsA	86	3.76e-09		
2p13A	90	4.37e-09		
2o1rA	81	8.85e-09		
2r2zA	93	1.77e-08		
2p4pA	86	2.06e-08		
2nqwA	93	3.61e-08		
2rk5A	87	9.34e-08		
2oaiA	94	1.85e-07		
2p3hA	101	2.13e-06		
1ei7A	158	0.7213	a.24.5.1	16584
2ngrB	234	18.17	a.116.1.1	19105
2qxfA	482	18.66		
2pp6A	102	21.57		
1pbwA	216	28.99	a.116.1.1	19103
1tx4A	198	33.18	a.116.1.1	19098
2h8lA	252	42.51		
2fgsA	179	55.79		
1zjjA	263	67.64		
1vjrA	271	70.71	c.108.1.14	100832
2c4nA	250	70.82	c.108.1.14	129837
1f7cA	231	75.66	a.116.1.1	19107
1fm0D	81	83.15	d.15.3.1	37642
2ovjA	201	85.08		
2z0dB	125	86.03	d.15.1.3	140096
1uzxA	169	88.51	d.20.1.2	100238