# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2plsA	86	3.65e-10		
2p13A	90	5.21e-10		
2pliA	91	8.27e-10		
2o1rA	81	1.54e-09		
2p4pA	86	2.02e-09		
2r2zA	93	2.98e-09		
2oaiA	94	3.43e-09		
2rk5A	87	1.77e-08		
2nqwA	93	3.37e-08		
2p3hA	101	1.15e-06		
1ei7A	158	1.273	a.24.5.1	16584
2pp6A	102	24.11		
1pbwA	216	24.90	a.116.1.1	19103
2qxfA	482	30.65		
1vk8A	106	39.66	d.58.48.1	108636
1hskA	326	56.98	d.145.1.2,d.146.1.1	61241,61242
9gafA	295	58.45	d.153.1.5	42008
2g2kA	170	59.22		
3ce7A	107	64.32		
1fm0D	81	68.22	d.15.3.1	37642
2ngrB	234	68.88	a.116.1.1	19105
2pg9A	337	70.38		
1neeA	138	73.22	d.241.1.1,g.59.1.1	91841,91842
2nt8A	223	76.90		
1l0iA	78	78.31	a.28.1.1	77643
2idxA	196	81.75		
1ahlA	49	85.05	g.9.1.1	44601
1r6jA	82	85.31	b.36.1.1	97151
1wvfA	520	86.83	d.58.32.1,d.145.1.1	121337,121338