# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2plsA 86 5.82e-12 2p13A 90 7.84e-12 2o1rA 81 1.35e-11 2pliA 91 1.39e-11 2r2zA 93 5.90e-11 2oaiA 94 2.97e-10 2nqwA 93 2.96e-09 2p4pA 86 3.91e-09 2rk5A 87 4.26e-09 2p3hA 101 1.72e-08 1hskA 326 4.758 d.145.1.2,d.146.1.1 61241,61242 2pp6A 102 5.804 1at3A 247 9.033 b.57.1.1 27021 1div 149 10.79 1jyaA 130 11.00 d.198.1.1 67453 1k6zA 141 14.47 d.198.1.1 68247 1psuA 140 18.66 d.38.1.5 88285 1ybdA 239 18.82 c.73.1.3 122884 2ov9A 216 19.12 2a1fA 247 20.36 c.73.1.3 125991 2vfrA 422 20.83 2riqA 160 20.89 1a49A 530 23.09 b.58.1.1,c.1.12.1,c.49.1.1 27026,29255,33109 1npsA 88 23.35 b.11.1.1 23622 2obwA 258 25.73 2vgfA 528 28.53 2yvsA 219 29.59 2p18A 311 30.62 2qedA 258 33.61 1f0xA 571 33.91 d.58.32.2,d.145.1.1 39483,41746 2yxyA 115 34.39 2j4jA 226 35.28 1jyoA 130 37.73 d.198.1.1 67483 1vmeA 410 38.16 c.23.5.1,d.157.1.3 108893,108894 1xb2B 291 38.64 a.5.2.2,d.43.1.1,d.43.1.1 115057,115058,115059 1p9yA 121 38.77 d.241.2.1 94402 1q47A 495 40.66 b.69.12.1 104532 2inpL 89 45.90 2b6eA 146 47.34 d.38.1.5 127986 1vqzA 341 47.34 d.224.1.3,d.104.1.3 120426,120427 2vgiA 528 48.09 1xkiA 162 49.68 b.60.1.1 115408 2qxfA 482 50.20 1vkyA 347 50.57 e.53.1.1 108696 2je6I 251 51.17 1b0aA 288 51.49 c.2.1.7,c.58.1.2 30286,33934 1q42A 201 52.32 d.17.4.2 95776 1wh2A 78 52.51 d.76.1.1 114630 1azo 232 53.74 2d74B 148 53.92 1sf9A 128 56.03 b.34.15.1 98831 1i8dA 213 61.17 b.43.4.3,b.43.4.3 61953,61954 2b2nA 344 61.41 c.37.1.19 127710 2r2qA 110 61.76 2iueA 212 64.56 2cy5A 140 65.76 b.55.1.2 131018 2fs2A 151 66.52 d.38.1.5 134003 2g2kA 170 67.54 1j83A 180 68.31 b.18.1.12 66430 2otnA 308 71.61 1x2gA 337 72.76 1wluA 136 73.19 d.38.1.5 121015 2g50A 530 73.19 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 1wi5A 119 75.48 b.40.4.5 114661 1e0tA 470 75.84 b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1w24A 182 76.95 d.159.1.7 120579 1xneA 113 77.30 b.122.1.6 115579 2blnA 305 78.85 b.46.1.1,c.65.1.1 128734,128735 1i19A 561 78.90 d.58.32.3,d.145.1.1 61522,61523 1x31C 206 80.18 1gs5A 258 80.58 c.73.1.2 70395 1h2rL 534 80.60 e.18.1.1 43298 2vgbA 528 81.59 1urjA 1136 82.88 e.58.1.1 113410 2z0dB 125 84.87 d.15.1.3 140096 2f0xA 148 84.97 d.38.1.5 132673 1ei7A 158 85.43 a.24.5.1 16584 1fu1A 203 85.60 b.59.1.1,h.1.11.1 27076,45630 1gsjA 258 86.29 c.73.1.2 70397 1ad2A 228 88.07 e.24.1.1 43353 1w1oA 534 88.77 d.58.32.4,d.145.1.1 109071,109072