This file specifies which residues will be varied Column 2: Chain Column 4-7: sequential residue number Column 9-12: pdb residue number Column 14-18: id (described below) Column 21-40: amino acids to be used NATAA => use native amino acid ALLAA => all amino acids NATRO => native amino acid and rotamer PIKAA => select inividual amino acids POLAR => polar amino acids APOLA => apolar amino acids The following demo lines are in the proper format A 1 3 NATAA A 2 4 ALLAA A 3 6 NATRO A 4 7 NATAA B 5 1 PIKAA DFLM B 6 2 PIKAA HIL B 7 3 POLAR ------------------------------------------------- start A 1 5 NATAA D A 2 6 NATAA E A 3 7 NATAA I A 4 8 NATAA V A 5 9 NATAA Q A 6 10 NATAA R A 7 11 NATAA E A 8 12 NATAA D A 9 13 NATAA G A 10 14 NATAA S A 11 15 NATAA W A 12 16 NATAA L A 13 17 NATAA V A 14 18 NATAA D A 15 19 NATAA G A 16 20 NATAA M A 17 21 NATAA V A 18 22 NATAA S A 19 23 NATAA L A 20 24 NATAA D A 21 25 NATAA R A 22 26 NATAA F A 23 27 NATAA R A 24 28 NATAA E A 25 29 NATAA F A 26 30 NATAA F A 27 31 NATAA E A 28 32 NATAA L A 29 33 NATAA E A 30 34 NATAA A A 31 35 NATRO P A 32 36 NATAA L A 33 37 NATRO P A 34 38 NATAA G A 35 39 NATAA E A 36 40 NATAA A A 37 41 NATAA G A 38 42 NATAA G A 39 43 NATAA N A 40 44 NATAA I A 41 45 NATAA H A 42 46 NATAA T A 43 47 NATAA L A 44 48 NATAA A A 45 49 NATAA G A 46 50 NATAA V A 47 51 NATAA M A 48 52 NATAA L A 49 53 NATAA Y A 50 54 NATAA Q A 51 55 NATAA L A 52 56 NATAA G A 53 57 NATAA R A 54 58 NATAA V A 55 59 NATRO P A 56 60 NATAA S A 57 61 NATAA V A 58 62 NATAA T A 59 63 NATAA D A 60 64 NATAA R A 61 65 NATAA F A 62 66 NATAA E A 63 67 NATAA W A 64 68 NATAA N A 65 69 NATAA G A 66 70 NATAA F A 67 71 NATAA S A 68 72 NATAA F A 69 73 NATAA E A 70 74 NATAA V A 71 75 NATAA V A 72 76 NATAA D A 73 77 NATAA M A 74 78 NATAA D A 75 79 NATAA R A 76 80 NATAA T A 77 81 NATAA R A 78 82 NATAA V A 79 83 NATAA D A 80 84 NATAA K A 81 85 NATAA I A 82 86 NATAA L A 83 87 NATAA V A 84 88 NATAA Q A 85 89 NATAA R A 86 90 NATAA H A 87 91 NATAA H