Best Alignments for TR435

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2qpwA	7.9089e-24	2qpwA/TR435-2qpwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o8jA	1.7592e-22	2o8jA/TR435-2o8jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2rfiA	1.8616e-22	2rfiA/TR435-2rfiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2igqA	7.9826e-22	2igqA/TR435-2igqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bo5A	1.0097e-21	3bo5A/TR435-3bo5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2r3aA	1.7640e-21	2r3aA/TR435-2r3aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zkkA	4.9465e-21	1zkkA/TR435-1zkkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ml9A	3.8706e-20	1ml9A/TR435-1ml9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.7.1
2f69A	8.1715e-20	2f69A/TR435-2f69A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
1n6aA	1.2627e-19	1n6aA/TR435-1n6aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
2h21A	2.8676e-10	2h21A/TR435-2h21A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.166.1.1 b.85.7.3
1p0yA	3.3361e-10	1p0yA/TR435-1p0yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.166.1.1 b.85.7.3
1n3jA	3.3392e-08	1n3jA/TR435-1n3jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.7.2
1lm5A	1.1952e+01	1lm5A/TR435-1lm5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.211.2.1
2ag4A	2.1573e+01	2ag4A/TR435-2ag4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.95.1.1
1lm7A	3.0461e+01	1lm7A/TR435-1lm7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.211.2.1
2pcxA	5.7249e+01	2pcxA/TR435-2pcxA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2bsyA	5.7402e+01	2bsyA/TR435-2bsyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.4.1 b.85.4.1
2p52A	5.8050e+01	2p52A/TR435-2p52A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ag9A	5.9547e+01	2ag9A/TR435-2ag9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001