Best Alignments for TR435

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2qpwA	5.4209e-22	2qpwA/TR435-2qpwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2igqA	3.3523e-08	2igqA/TR435-2igqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o8jA	3.4729e-08	2o8jA/TR435-2o8jA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2rfiA	5.0056e-08	2rfiA/TR435-2rfiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bo5A	6.2241e-08	3bo5A/TR435-3bo5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zkkA	1.6813e-06	1zkkA/TR435-1zkkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1n3jA	5.3924e-06	1n3jA/TR435-1n3jA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.7.2
1n6aA	5.4256e-06	1n6aA/TR435-1n6aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
1ml9A	1.2043e-05	1ml9A/TR435-1ml9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.7.1
2f69A	4.5553e-05	2f69A/TR435-2f69A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
2h21A	7.0436e-01	2h21A/TR435-2h21A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.166.1.1 b.85.7.3
2dtcA	4.8083e+00	2dtcA/TR435-2dtcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2agcA	5.6742e+00	2agcA/TR435-2agcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1u5fA	7.5537e+00	1u5fA/TR435-1u5fA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.55.1.1
1p0yA	8.3004e+00	1p0yA/TR435-1p0yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.166.1.1 b.85.7.3
2p0dA	9.4249e+00	2p0dA/TR435-2p0dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1btn	1.4422e+01	1btn/TR435-1btn-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1t92A	1.6991e+01	1t92A/TR435-1t92A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.24.1.3
1btnA	1.9158e+01	1btnA/TR435-1btnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.55.1.1
1ku3A	1.9550e+01	1ku3A/TR435-1ku3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001