# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 7.59e-25 2o8jA 281 2.98e-07 2igqA 285 4.64e-07 3bo5A 290 2.21e-06 2rfiA 285 3.84e-06 1zkkA 167 7.34e-06 1n6aA 259 1.54e-05 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 5.72e-05 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 0.000135 b.85.7.2 79963 1ml9A 302 0.000200 b.85.7.1 79282 2agcA 162 0.2039 2ag9A 164 1.152 2dtcA 126 1.442 1u5fA 148 1.903 b.55.1.1 119542 1t92A 116 2.674 d.24.1.3 112326 1p0yA 444 3.193 a.166.1.1,b.85.7.3 87654,87655 1gydB 315 3.935 b.67.2.1 70751 1gpr 162 5.285 1gprA 162 5.428 b.84.3.1 28267 2h21A 440 5.806 a.166.1.1,b.85.7.3 135976,135977 1r88A 280 6.687 c.69.1.3 97219 2p0dA 129 7.608 1f3zA 161 8.498 b.84.3.1 28273 1btnA 106 8.926 b.55.1.1 26952 1giqA 413 10.12 d.166.1.1,d.166.1.1 76224,76225 2j3xA 431 10.71 1txdA 385 10.76 a.87.1.1,b.55.1.1 107422,107423 1bdfA 235 11.87 d.74.3.1,d.181.1.1 39727,42602 2dfkA 402 12.17 1v7rA 186 12.44 c.51.4.1 100482 2dreA 180 12.94 1l6xA 207 13.98 b.1.1.2,b.1.1.2 73642,73643 1kz7A 353 14.94 a.87.1.1,b.55.1.1 73333,73334 1xy7A 166 15.97 d.32.1.9 116215 1kjwA 295 16.25 b.34.2.1,c.37.1.1 68643,68644 1btn 106 17.43 1b7jA 66 17.48 b.85.1.1 28283 1dbhA 354 20.54 a.87.1.1,b.55.1.1 18514,26967 1lk2B 99 20.75 b.1.1.2 91058 1ntyA 311 22.53 a.87.1.1,b.55.1.1 103873,103874 1ucsA 64 24.35 b.85.1.1 88466 2dtqA 223 24.52 b.1.1.2,b.1.1.2 131725,131726 1who 96 25.41 1btkA 169 25.79 b.55.1.1 26959 2z0qA 346 26.35 1ru3A 732 26.81 e.26.1.3 97835 1ki1B 352 29.45 a.87.1.1,b.55.1.1 72497,72498 1kjvB 100 30.27 b.1.1.2 77423 2v31A 112 30.81 2exnA 136 31.45 b.165.1.1 132562 2dynA 122 31.87 b.55.1.1 26957 1qs8A 329 32.42 b.50.1.2 26887 2volA 207 34.79 1qqgA 264 34.80 b.55.1.2,b.55.1.2 26987,26988 2acoA 173 39.03 1fc2D 224 40.70 b.1.1.2,b.1.1.2 21516,21517 1pmyA 123 42.80 b.6.1.1 22888 2pdrA 149 42.88 1ywsA 82 42.91 g.41.17.1 124163 1upqA 123 43.42 b.55.1.1 113392 1pfzA 380 44.24 b.50.1.2 26881 1ao7B 100 45.70 b.1.1.2 20697 1b3bA 415 47.51 c.2.1.7,c.58.1.1 30244,33892 1emsA 440 48.59 d.13.1.1,d.160.1.1 37520,42086 1b26A 416 48.79 c.2.1.7,c.58.1.1 30232,33880 1i3uA 127 48.88 b.1.1.1 61636 2geyA 158 49.03 1jftA 340 50.59 a.35.1.5,c.93.1.1 66652,66653 1us5A 314 51.07 c.94.1.1 99856 1e87A 118 52.57 d.169.1.1 42327 1u2bA 138 52.87 b.55.1.1 119474 1mjgM 729 53.42 e.26.1.3 79204 1u5dA 108 55.30 b.55.1.1 119536 1oaoC 729 55.31 e.26.1.3 86746 1zm0A 114 55.69 b.55.1.1 125276 2qe0A 475 56.35 3bjvA 161 58.07 1o7fA 469 58.53 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1whoA 96 58.60 b.7.3.1 23215 1kriA 186 60.21 b.29.1.14 72897 2v8qA 157 60.66 1bnbA 38 60.70 g.9.1.1 44592 2j6gA 266 60.72 1fc1A 224 65.51 b.1.1.2,b.1.1.2 21520,21521 1b7iA 66 66.41 b.85.1.1 28288 1qwdA 177 67.09 b.60.1.1 96471 2sliA 679 67.13 b.29.1.9,b.68.1.1 24274,27611 1kqrA 179 67.80 b.29.1.14 72886 1hrdA 449 68.25 c.2.1.7,c.58.1.1 30219,33867 2ohcA 289 69.89 1mp8A 281 69.96 d.144.1.7 91384 2i5fA 109 70.16 1k5nB 100 70.23 b.1.1.2 77268 1hg7A 66 70.46 b.85.1.1 28280 1cd1A 315 70.72 b.1.1.2,d.19.1.1 21579,38155 3bk5A 237 74.50 1v0wA 506 74.77 d.136.1.2,d.136.1.2 108220,108221 2nw2A 200 74.89 2e70A 71 77.22 2a6zA 222 78.27 b.29.1.13 126319 1vjuA 309 78.97 d.248.1.1 100835 3cj8A 236 80.54 2o2pA 517 81.45 1dbqA 289 82.62 c.93.1.1 35666 2jqoA 108 84.48 1b7kA 66 84.80 b.85.1.1 28306 1faoA 126 85.52 b.55.1.1 26974 2pnqA 467 85.94