# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 2.00e-24 2igqA 285 4.07e-07 2o8jA 281 5.22e-07 3bo5A 290 4.15e-06 2rfiA 285 5.47e-06 1zkkA 167 1.24e-05 1n6aA 259 3.79e-05 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 0.000128 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 0.000196 b.85.7.2 79963 1ml9A 302 0.000333 b.85.7.1 79282 2agcA 162 0.2670 1u5fA 148 1.612 b.55.1.1 119542 1t92A 116 1.651 d.24.1.3 112326 2dtcA 126 1.672 2p0dA 129 1.903 1gydB 315 2.004 b.67.2.1 70751 2ag9A 164 2.132 2h21A 440 2.262 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 3.940 a.166.1.1,b.85.7.3 87654,87655 1v7rA 186 4.677 c.51.4.1 100482 1gpr 162 6.485 1gprA 162 7.089 b.84.3.1 28267 1btnA 106 8.406 b.55.1.1 26952 1f3zA 161 8.570 b.84.3.1 28273 2dfkA 402 10.59 1kz7A 353 10.61 a.87.1.1,b.55.1.1 73333,73334 1r88A 280 10.62 c.69.1.3 97219 1txdA 385 12.08 a.87.1.1,b.55.1.1 107422,107423 1giqA 413 12.42 d.166.1.1,d.166.1.1 76224,76225 1btkA 169 14.13 b.55.1.1 26959 1l6xA 207 15.61 b.1.1.2,b.1.1.2 73642,73643 1dbhA 354 16.52 a.87.1.1,b.55.1.1 18514,26967 1btn 106 17.04 1qs8A 329 17.29 b.50.1.2 26887 2qe0A 475 19.35 2j3xA 431 19.61 1qqgA 264 20.53 b.55.1.2,b.55.1.2 26987,26988 2pdrA 149 20.78 1who 96 21.19 2v31A 112 22.04 1lk2B 99 22.30 b.1.1.2 91058 2dtqA 223 26.37 b.1.1.2,b.1.1.2 131725,131726 1u5dA 108 26.72 b.55.1.1 119536 1hrdA 449 27.88 c.2.1.7,c.58.1.1 30219,33867 2acoA 173 28.65 1b7jA 66 28.97 b.85.1.1 28283 1xy7A 166 29.48 d.32.1.9 116215 2ohcA 289 29.71 1ao7B 100 31.68 b.1.1.2 20697 1kjwA 295 32.13 b.34.2.1,c.37.1.1 68643,68644 1pls 113 32.91 2volA 207 33.32 1kjvB 100 35.16 b.1.1.2 77423 1ntyA 311 38.60 a.87.1.1,b.55.1.1 103873,103874 2dynA 122 40.22 b.55.1.1 26957 1bdfA 235 41.03 d.74.3.1,d.181.1.1 39727,42602 1pmyA 123 41.99 b.6.1.1 22888 1fc2D 224 42.68 b.1.1.2,b.1.1.2 21516,21517 2z0qA 346 44.08 2j6gA 266 46.01 1upqA 123 47.52 b.55.1.1 113392 1fc1A 224 48.26 b.1.1.2,b.1.1.2 21520,21521 2geyA 158 48.73 1ucsA 64 48.88 b.85.1.1 88466 1e43A 483 50.26 b.71.1.1,c.1.8.1 59217,59218 1ki1B 352 51.02 a.87.1.1,b.55.1.1 72497,72498 1whoA 96 51.38 b.7.3.1 23215 1b26A 416 52.82 c.2.1.7,c.58.1.1 30232,33880 1u2bA 138 53.89 b.55.1.1 119474 3cj8A 236 57.08 1b3bA 415 57.29 c.2.1.7,c.58.1.1 30244,33892 1k5nB 100 57.59 b.1.1.2 77268 1o7fA 469 60.60 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1qwdA 177 61.30 b.60.1.1 96471 1pfzA 380 61.88 b.50.1.2 26881 1v61A 132 65.61 b.55.1.1 108389 1zm0A 114 65.68 b.55.1.1 125276 3d72A 149 66.72 2exnA 136 67.76 b.165.1.1 132562 1uzbA 516 69.78 c.82.1.1 100220 1faoA 126 72.86 b.55.1.1 26974 2dreA 180 73.23 1i3uA 127 73.81 b.1.1.1 61636 1f89A 291 74.98 d.160.1.1 64988 2o2pA 517 75.23 1q0rA 298 76.78 c.69.1.28 95508 2vroA 532 82.09 2a6zA 222 83.11 b.29.1.13 126319 3ck6A 252 85.27 1q74A 303 88.08 c.134.1.1 96019 1a21A 219 88.95 b.1.2.1,b.1.2.1 21967,21968 2vrwB 406 89.31 1eagA 342 89.36 b.50.1.2 26826