# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 2.41e-22 2o8jA 281 4.33e-07 2igqA 285 5.93e-07 2rfiA 285 6.95e-06 1zkkA 167 8.45e-06 3bo5A 290 8.58e-06 1n6aA 259 6.05e-05 b.76.2.1,b.85.7.1 80121,80122 1ml9A 302 0.000267 b.85.7.1 79282 2f69A 261 0.000387 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 0.001271 b.85.7.2 79963 2p0dA 129 0.5206 2agcA 162 0.5250 1u5fA 148 1.122 b.55.1.1 119542 1t92A 116 1.265 d.24.1.3 112326 2h21A 440 1.312 a.166.1.1,b.85.7.3 135976,135977 1btnA 106 1.913 b.55.1.1 26952 1kz7A 353 2.547 a.87.1.1,b.55.1.1 73333,73334 1p0yA 444 2.774 a.166.1.1,b.85.7.3 87654,87655 1r88A 280 3.174 c.69.1.3 97219 1dbhA 354 3.620 a.87.1.1,b.55.1.1 18514,26967 2dtcA 126 3.981 1v7rA 186 4.310 c.51.4.1 100482 1btn 106 4.379 2ag9A 164 4.808 2j3xA 431 5.146 1xy7A 166 5.441 d.32.1.9 116215 1giqA 413 8.080 d.166.1.1,d.166.1.1 76224,76225 1kjwA 295 8.595 b.34.2.1,c.37.1.1 68643,68644 1upqA 123 11.68 b.55.1.1 113392 2acoA 173 11.87 1b7jA 66 13.84 b.85.1.1 28283 2z0qA 346 13.97 1pmyA 123 14.08 b.6.1.1 22888 2geyA 158 15.41 1rfeA 162 16.30 b.45.1.1 111796 1ki1B 352 17.68 a.87.1.1,b.55.1.1 72497,72498 2exnA 136 19.02 b.165.1.1 132562 1ucsA 64 19.35 b.85.1.1 88466 1hrdA 449 19.41 c.2.1.7,c.58.1.1 30219,33867 2ohcA 289 22.04 2ch4W 151 22.93 b.40.7.1 130451 1who 96 23.74 2a6zA 222 23.97 b.29.1.13 126319 1zy9A 564 24.49 b.30.5.11,c.1.8.13 125813,125814 1pls 113 24.96 1b26A 416 24.98 c.2.1.7,c.58.1.1 30232,33880 2gc9A 179 25.64 b.60.1.6 134972 1b7iA 66 26.31 b.85.1.1 28288 1tufA 434 27.52 b.49.2.3,c.1.6.1 107335,107336 2nzhA 113 27.77 1kexA 155 27.77 b.18.1.2 77350 1zm0A 114 28.49 b.55.1.1 125276 3bk5A 237 28.52 1twiA 434 29.72 b.49.2.3,c.1.6.1 107399,107400 1ywsA 82 29.77 g.41.17.1 124163 1bdfA 235 30.21 d.74.3.1,d.181.1.1 39727,42602 1y55X 126 30.56 1txdA 385 31.36 a.87.1.1,b.55.1.1 107422,107423 1yopA 83 31.47 g.41.17.1 123782 1v61A 132 32.44 b.55.1.1 108389 2iu8A 374 33.23 1l6xA 207 33.72 b.1.1.2,b.1.1.2 73642,73643 1u5dA 108 37.20 b.55.1.1 119536 1b3bA 415 37.22 c.2.1.7,c.58.1.1 30244,33892 1btkA 169 37.62 b.55.1.1 26959 2eng 210 38.31 1kafA 108 38.50 d.199.1.1 68372 1mrjA 247 38.52 d.165.1.1 42177 1b7kA 66 38.87 b.85.1.1 28306 1qqgA 264 39.40 b.55.1.2,b.55.1.2 26987,26988 1gydB 315 39.44 b.67.2.1 70751 2i5fA 109 40.26 2e70A 71 41.35 1jxmA 301 41.48 b.34.2.1,c.37.1.1 67420,67421 1hg7A 66 42.16 b.85.1.1 28280 1gvfA 286 43.48 c.1.10.2 70599 1w9zA 283 44.98 1u2bA 138 45.13 b.55.1.1 119474 2dfkA 402 46.75 2dc0A 434 47.05 2pdrA 149 47.58 2p8gA 162 47.62 1rwiA 270 49.43 b.68.9.1 97987 2engA 210 52.40 b.52.1.1 26895 1whoA 96 54.75 b.7.3.1 23215 1erw 105 56.16 1qs8A 329 58.48 b.50.1.2 26887 1ao7B 100 60.80 b.1.1.2 20697 2dxqA 150 62.06 2h8lA 252 62.29 1xx0A 127 63.62 b.55.1.1 122412 1x05A 129 64.66 b.55.1.1 121543 2crvA 120 65.30 2chhA 114 65.68 b.115.1.1 130471 2cfuA 658 67.03 1wqjB 80 68.61 1nxmA 197 70.49 b.82.1.1 86385 1m9zA 111 72.49 g.7.1.3 78881 2i9uA 439 73.74 2v31A 112 73.88 1qwdA 177 75.32 b.60.1.1 96471 1o0wA 252 77.69 a.149.1.1,d.50.1.1 80751,80752 1vetB 125 78.92 d.110.7.1 108554 1vpbA 451 79.79 d.283.1.1 113950 1z0rA 53 80.18 b.129.1.3 124326 1erzA 303 81.22 d.160.1.2 59498 2dtqA 223 81.37 b.1.1.2,b.1.1.2 131725,131726 2qudA 125 81.99 1bgvA 449 82.33 c.2.1.7,c.58.1.1 30217,33865 1auuA 55 82.94 b.35.2.1 24769 1kjvB 100 83.34 b.1.1.2 77423 1l8fA 207 83.52 b.52.1.1 84537 2vdvE 246 83.53 1ntyA 311 85.73 a.87.1.1,b.55.1.1 103873,103874 3brkX 420 86.88 1bnbA 38 87.25 g.9.1.1 44592 3bb6A 127 88.08 2volA 207 89.44