# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 4.48e-21 2igqA 285 1.47e-05 2o8jA 281 2.53e-05 3bo5A 290 8.69e-05 2rfiA 285 9.47e-05 1zkkA 167 0.000249 1n6aA 259 0.001102 b.76.2.1,b.85.7.1 80121,80122 1n3jA 119 0.002173 b.85.7.2 79963 2f69A 261 0.002816 b.76.2.1,b.85.7.1 133035,133036 1ml9A 302 0.004996 b.85.7.1 79282 2agcA 162 0.5510 1u5fA 148 1.336 b.55.1.1 119542 2dtcA 126 2.234 2p0dA 129 2.248 1btnA 106 4.676 b.55.1.1 26952 1gpr 162 4.793 1gprA 162 5.315 b.84.3.1 28267 1f3zA 161 5.458 b.84.3.1 28273 1t92A 116 5.599 d.24.1.3 112326 1gydB 315 6.943 b.67.2.1 70751 2ag9A 164 7.140 1p0yA 444 8.384 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 8.869 a.166.1.1,b.85.7.3 135976,135977 1btn 106 9.402 1v7rA 186 9.520 c.51.4.1 100482 1btkA 169 10.54 b.55.1.1 26959 1txdA 385 14.68 a.87.1.1,b.55.1.1 107422,107423 1giqA 413 14.80 d.166.1.1,d.166.1.1 76224,76225 2dfkA 402 15.34 1kz7A 353 17.86 a.87.1.1,b.55.1.1 73333,73334 1xy7A 166 19.91 d.32.1.9 116215 1upqA 123 21.79 b.55.1.1 113392 1dbhA 354 22.23 a.87.1.1,b.55.1.1 18514,26967 2ohcA 289 22.35 1q74A 303 23.16 c.134.1.1 96019 1ki1B 352 24.17 a.87.1.1,b.55.1.1 72497,72498 2qe0A 475 27.00 1l6xA 207 27.86 b.1.1.2,b.1.1.2 73642,73643 1o20A 427 28.48 c.82.1.1 86556 2vroA 532 31.21 1lk2B 99 31.26 b.1.1.2 91058 2dynA 122 32.84 b.55.1.1 26957 1emsA 440 33.54 d.13.1.1,d.160.1.1 37520,42086 1r88A 280 33.56 c.69.1.3 97219 1kjvB 100 34.10 b.1.1.2 77423 1u5dA 108 34.13 b.55.1.1 119536 1zm0A 114 34.20 b.55.1.1 125276 1ao7B 100 34.27 b.1.1.2 20697 1y55X 126 34.36 2j3xA 431 37.35 2z0qA 346 40.37 1k5nB 100 45.35 b.1.1.2 77268 1pls 113 48.32 1b55A 169 48.43 b.55.1.1 26963 1bdfA 235 48.51 d.74.3.1,d.181.1.1 39727,42602 2pdrA 149 48.56 1qqgA 264 49.05 b.55.1.2,b.55.1.2 26987,26988 1uzbA 516 49.55 c.82.1.1 100220 1qs8A 329 51.01 b.50.1.2 26887 2dc0A 434 52.86 1faoA 126 52.88 b.55.1.1 26974 2o2pA 517 54.90 1t90A 486 55.75 2geyA 158 56.25 2acoA 173 58.96 1hrdA 449 64.18 c.2.1.7,c.58.1.1 30219,33867 1ntyA 311 64.19 a.87.1.1,b.55.1.1 103873,103874 2dtqA 223 65.87 b.1.1.2,b.1.1.2 131725,131726 1b3bA 415 70.09 c.2.1.7,c.58.1.1 30244,33892 1u2bA 138 70.95 b.55.1.1 119474 1b26A 416 71.67 c.2.1.7,c.58.1.1 30232,33880 1yopA 83 71.79 g.41.17.1 123782 1b7jA 66 72.40 b.85.1.1 28283 1pmyA 123 73.04 b.6.1.1 22888 2volA 207 73.07 2j6gA 266 74.38 3bevB 99 76.52 1rfeA 162 76.98 b.45.1.1 111796 2jqoA 108 77.71 2rcvA 202 79.37 1xreA 217 79.97 1fgyA 127 80.15 b.55.1.1 26976 3bk5A 237 80.45 1who 96 81.35 2a6zA 222 82.83 b.29.1.13 126319 2dreA 180 84.51 1dynA 125 85.49 b.55.1.1 26955 2d4eA 515 86.48 2bjkA 516 86.81 2i5fA 109 87.96