# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 1.79e-22 2igqA 285 2.71e-06 2o8jA 281 4.25e-06 3bo5A 290 2.16e-05 2rfiA 285 2.56e-05 1zkkA 167 0.000136 1n6aA 259 0.000187 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 0.000571 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 0.000819 b.85.7.2 79963 1ml9A 302 0.002109 b.85.7.1 79282 2agcA 162 0.6261 1t92A 116 2.054 d.24.1.3 112326 1u5fA 148 3.812 b.55.1.1 119542 1gydB 315 4.229 b.67.2.1 70751 2h21A 440 4.499 a.166.1.1,b.85.7.3 135976,135977 2dtcA 126 4.773 1gpr 162 5.030 1f3zA 161 5.313 b.84.3.1 28273 1v7rA 186 5.793 c.51.4.1 100482 1gprA 162 5.817 b.84.3.1 28267 2p0dA 129 5.822 1p0yA 444 8.286 a.166.1.1,b.85.7.3 87654,87655 1btnA 106 10.88 b.55.1.1 26952 2ag9A 164 13.99 1l6xA 207 15.48 b.1.1.2,b.1.1.2 73642,73643 1emsA 440 18.50 d.13.1.1,d.160.1.1 37520,42086 2qe0A 475 19.21 1r88A 280 20.59 c.69.1.3 97219 1giqA 413 21.24 d.166.1.1,d.166.1.1 76224,76225 2vroA 532 21.42 1btn 106 23.02 2acoA 173 25.83 1txdA 385 28.85 a.87.1.1,b.55.1.1 107422,107423 1btkA 169 31.38 b.55.1.1 26959 1q74A 303 32.56 c.134.1.1 96019 1y55X 126 32.60 1lk2B 99 33.04 b.1.1.2 91058 1o20A 427 34.53 c.82.1.1 86556 1kjvB 100 34.98 b.1.1.2 77423 1ao7B 100 35.51 b.1.1.2 20697 1bdfA 235 36.98 d.74.3.1,d.181.1.1 39727,42602 2j3xA 431 37.01 2dfkA 402 38.64 2dtqA 223 39.28 b.1.1.2,b.1.1.2 131725,131726 1dbhA 354 39.66 a.87.1.1,b.55.1.1 18514,26967 2dynA 122 39.93 b.55.1.1 26957 1uzbA 516 41.98 c.82.1.1 100220 2volA 207 42.28 2pdrA 149 45.61 1upqA 123 47.47 b.55.1.1 113392 1xy7A 166 49.49 d.32.1.9 116215 2dc0A 434 51.50 2o2pA 517 51.81 1b7jA 66 52.00 b.85.1.1 28283 1k5nB 100 52.83 b.1.1.2 77268 1t90A 486 53.21 1pmyA 123 55.07 b.6.1.1 22888 1b26A 416 56.41 c.2.1.7,c.58.1.1 30232,33880 2geyA 158 57.53 1b3bA 415 57.57 c.2.1.7,c.58.1.1 30244,33892 1kz7A 353 58.18 a.87.1.1,b.55.1.1 73333,73334 2v31A 112 60.23 1ntyA 311 64.10 a.87.1.1,b.55.1.1 103873,103874 1who 96 66.78 1ucsA 64 67.47 b.85.1.1 88466 2jqoA 108 72.12 2dreA 180 72.30 2j6gA 266 72.54 1u2bA 138 73.68 b.55.1.1 119474 2z0qA 346 74.42 1hrdA 449 74.62 c.2.1.7,c.58.1.1 30219,33867 1qs8A 329 74.70 b.50.1.2 26887 1kjwA 295 78.75 b.34.2.1,c.37.1.1 68643,68644 2d4eA 515 79.99 1i3uA 127 82.23 b.1.1.1 61636 2bjkA 516 82.25 1f89A 291 84.87 d.160.1.1 64988 1fc2D 224 85.02 b.1.1.2,b.1.1.2 21516,21517 1bnbA 38 86.22 g.9.1.1 44592 3bevB 99 86.59 1whoA 96 86.88 b.7.3.1 23215 2j6lA 500 87.71 1dbqA 289 88.63 c.93.1.1 35666