# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 3.49e-22 2igqA 285 3.88e-06 2o8jA 281 5.25e-06 3bo5A 290 3.00e-05 2rfiA 285 3.36e-05 1zkkA 167 0.000133 1n6aA 259 0.000360 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 0.001332 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 0.002096 b.85.7.2 79963 1ml9A 302 0.002194 b.85.7.1 79282 2agcA 162 0.6800 2dtcA 126 1.031 1u5fA 148 1.165 b.55.1.1 119542 2p0dA 129 1.680 1t92A 116 4.101 d.24.1.3 112326 1gydB 315 4.277 b.67.2.1 70751 1btnA 106 5.901 b.55.1.1 26952 1v7rA 186 6.159 c.51.4.1 100482 2h21A 440 7.788 a.166.1.1,b.85.7.3 135976,135977 1btkA 169 8.286 b.55.1.1 26959 1f3zA 161 9.242 b.84.3.1 28273 1p0yA 444 9.509 a.166.1.1,b.85.7.3 87654,87655 1gpr 162 9.678 1txdA 385 10.14 a.87.1.1,b.55.1.1 107422,107423 1btn 106 11.48 1gprA 162 11.50 b.84.3.1 28267 2dfkA 402 13.25 1ntyA 311 15.07 a.87.1.1,b.55.1.1 103873,103874 1dbhA 354 15.80 a.87.1.1,b.55.1.1 18514,26967 1u2bA 138 17.32 b.55.1.1 119474 1upqA 123 17.57 b.55.1.1 113392 2ag9A 164 17.75 1kz7A 353 18.22 a.87.1.1,b.55.1.1 73333,73334 2qe0A 475 20.06 1l6xA 207 21.10 b.1.1.2,b.1.1.2 73642,73643 2z0qA 346 21.25 1u5dA 108 29.13 b.55.1.1 119536 2vroA 532 33.89 1b55A 169 33.90 b.55.1.1 26963 1y55X 126 34.03 1q74A 303 34.93 c.134.1.1 96019 1o20A 427 35.01 c.82.1.1 86556 1giqA 413 35.59 d.166.1.1,d.166.1.1 76224,76225 1ki1B 352 35.72 a.87.1.1,b.55.1.1 72497,72498 1qqgA 264 36.88 b.55.1.2,b.55.1.2 26987,26988 1lk2B 99 37.38 b.1.1.2 91058 1ao7B 100 40.81 b.1.1.2 20697 1bdfA 235 41.33 d.74.3.1,d.181.1.1 39727,42602 1pls 113 43.10 1zm0A 114 43.25 b.55.1.1 125276 1r88A 280 44.24 c.69.1.3 97219 2ohcA 289 44.72 1kjvB 100 48.75 b.1.1.2 77423 1uzbA 516 49.76 c.82.1.1 100220 2dtqA 223 53.05 b.1.1.2,b.1.1.2 131725,131726 1fgyA 127 53.70 b.55.1.1 26976 1hrdA 449 54.35 c.2.1.7,c.58.1.1 30219,33867 2vdvE 246 55.34 2dynA 122 56.17 b.55.1.1 26957 1xy7A 166 56.39 d.32.1.9 116215 1b7jA 66 58.15 b.85.1.1 28283 2o2pA 517 58.29 2volA 207 58.52 1b3bA 415 59.43 c.2.1.7,c.58.1.1 30244,33892 1k5nB 100 59.95 b.1.1.2 77268 1emsA 440 60.20 d.13.1.1,d.160.1.1 37520,42086 2pdrA 149 63.07 2i5fA 109 63.81 1qs8A 329 64.09 b.50.1.2 26887 2acoA 173 66.27 2j6gA 266 66.42 1t90A 486 67.75 1faoA 126 69.10 b.55.1.1 26974 2geyA 158 71.10 1jftA 340 73.26 a.35.1.5,c.93.1.1 66652,66653 2j3xA 431 73.36 1b26A 416 74.61 c.2.1.7,c.58.1.1 30232,33880 1ucsA 64 77.06 b.85.1.1 88466 2dc0A 434 77.22 1dbqA 289 78.91 c.93.1.1 35666 2jqoA 108 80.44 2fm9A 215 81.33 a.257.1.1 133770 2v31A 112 82.60 2dreA 180 83.48 2bkfA 87 85.43 d.15.2.2 128699 1bnbA 38 86.73 g.9.1.1 44592