# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	1.71e-19		
2igqA	285	2.56e-06		
2o8jA	281	5.39e-06		
2rfiA	285	1.69e-05		
3bo5A	290	3.39e-05		
1zkkA	167	0.000113		
1n6aA	259	0.000285	b.76.2.1,b.85.7.1	80121,80122
2f69A	261	0.000334	b.76.2.1,b.85.7.1	133035,133036
1n3jA	119	0.000765	b.85.7.2	79963
1ml9A	302	0.001072	b.85.7.1	79282
2h21A	440	1.484	a.166.1.1,b.85.7.3	135976,135977
2dtcA	126	2.333		
1v7rA	186	4.390	c.51.4.1	100482
2agcA	162	4.837		
1p0yA	444	6.295	a.166.1.1,b.85.7.3	87654,87655
1u5fA	148	7.083	b.55.1.1	119542
1dbhA	354	9.677	a.87.1.1,b.55.1.1	18514,26967
2ohcA	289	9.776		
2fm9A	215	11.73	a.257.1.1	133770
2p0dA	129	14.18		
1txdA	385	14.94	a.87.1.1,b.55.1.1	107422,107423
1gydB	315	18.02	b.67.2.1	70751
1upqA	123	18.33	b.55.1.1	113392
1b7jA	66	21.47	b.85.1.1	28283
2ag9A	164	21.95		
1i3uA	127	22.59	b.1.1.1	61636
1skoB	130	23.24	d.110.7.1	105677
2dfkA	402	25.65		
1vetB	125	28.31	d.110.7.1	108554
1kz7A	353	32.64	a.87.1.1,b.55.1.1	73333,73334
1u2bA	138	36.44	b.55.1.1	119474
1ucsA	64	37.90	b.85.1.1	88466
1qqgA	264	38.35	b.55.1.2,b.55.1.2	26987,26988
1r88A	280	40.71	c.69.1.3	97219
2fl7A	232	44.17		
2jqoA	108	47.35		
1btnA	106	47.80	b.55.1.1	26952
1btkA	169	51.57	b.55.1.1	26959
2dc0A	434	52.33		
1ki1B	352	57.75	a.87.1.1,b.55.1.1	72497,72498
1b7kA	66	59.27	b.85.1.1	28306
1btn	106	59.38		
1ntyA	311	60.89	a.87.1.1,b.55.1.1	103873,103874
1vhhA	162	67.79	d.65.1.2	39550
1b7iA	66	67.96	b.85.1.1	28288
1brsD	89	68.16	c.9.1.1	30825
1hg7A	66	74.02	b.85.1.1	28280
2dreA	180	77.09		
1b27D	90	84.19	c.9.1.1	30840
2daxA	152	85.41		
1b3sD	90	86.43	c.9.1.1	30846
1k5nB	100	88.42	b.1.1.2	77268