# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 3.65e-23 2igqA 285 4.78e-06 2o8jA 281 5.80e-06 3bo5A 290 2.09e-05 2rfiA 285 3.34e-05 1zkkA 167 0.000102 1n6aA 259 0.000417 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 0.000962 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 0.001367 b.85.7.2 79963 1ml9A 302 0.002238 b.85.7.1 79282 2agcA 162 0.6937 2dtcA 126 0.7962 1u5fA 148 0.9121 b.55.1.1 119542 2p0dA 129 1.367 1btnA 106 2.970 b.55.1.1 26952 1t92A 116 4.269 d.24.1.3 112326 1gydB 315 4.941 b.67.2.1 70751 1gpr 162 4.950 1gprA 162 5.208 b.84.3.1 28267 1f3zA 161 5.324 b.84.3.1 28273 1btn 106 6.148 2h21A 440 6.533 a.166.1.1,b.85.7.3 135976,135977 2ag9A 164 7.019 2dfkA 402 8.929 1qqgA 264 8.932 b.55.1.2,b.55.1.2 26987,26988 1p0yA 444 9.326 a.166.1.1,b.85.7.3 87654,87655 1btkA 169 9.642 b.55.1.1 26959 1kz7A 353 9.763 a.87.1.1,b.55.1.1 73333,73334 1ki1B 352 11.84 a.87.1.1,b.55.1.1 72497,72498 1v7rA 186 12.36 c.51.4.1 100482 1dbhA 354 13.40 a.87.1.1,b.55.1.1 18514,26967 1ntyA 311 15.67 a.87.1.1,b.55.1.1 103873,103874 1u5dA 108 15.79 b.55.1.1 119536 1upqA 123 16.96 b.55.1.1 113392 1txdA 385 17.63 a.87.1.1,b.55.1.1 107422,107423 1giqA 413 17.88 d.166.1.1,d.166.1.1 76224,76225 2z0qA 346 19.08 2dynA 122 20.98 b.55.1.1 26957 1xy7A 166 24.80 d.32.1.9 116215 1r88A 280 25.16 c.69.1.3 97219 2ohcA 289 25.17 1eazA 125 27.57 b.55.1.1 70113 2vroA 532 28.16 1vetB 125 28.83 d.110.7.1 108554 1zm0A 114 29.51 b.55.1.1 125276 1lk2B 99 30.81 b.1.1.2 91058 1faoA 126 31.45 b.55.1.1 26974 1skoB 130 31.67 d.110.7.1 105677 1qs8A 329 32.78 b.50.1.2 26887 2i5fA 109 35.65 1pls 113 35.82 1l6xA 207 35.91 b.1.1.2,b.1.1.2 73642,73643 1kjvB 100 36.71 b.1.1.2 77423 2pdrA 149 37.49 2dreA 180 40.02 2j3xA 431 40.25 1bdfA 235 41.19 d.74.3.1,d.181.1.1 39727,42602 1pmyA 123 42.26 b.6.1.1 22888 1u2bA 138 42.35 b.55.1.1 119474 2acoA 173 42.89 1kjwA 295 45.96 b.34.2.1,c.37.1.1 68643,68644 1ao7B 100 46.45 b.1.1.2 20697 2a6zA 222 46.58 b.29.1.13 126319 2qe0A 475 49.34 1who 96 49.82 2geyA 158 50.57 1k5nB 100 50.72 b.1.1.2 77268 1b3bA 415 50.95 c.2.1.7,c.58.1.1 30244,33892 1b7jA 66 52.60 b.85.1.1 28283 1b2pA 119 53.13 b.78.1.1 27998 1o20A 427 54.07 c.82.1.1 86556 1hrdA 449 55.93 c.2.1.7,c.58.1.1 30219,33867 1b55A 169 56.39 b.55.1.1 26963 1mrjA 247 58.24 d.165.1.1 42177 2gc9A 179 59.03 b.60.1.6 134972 1ywsA 82 59.70 g.41.17.1 124163 1dbqA 289 59.99 c.93.1.1 35666 1y55X 126 60.97 1b26A 416 61.59 c.2.1.7,c.58.1.1 30232,33880 1kafA 108 62.42 d.199.1.1 68372 2exnA 136 67.26 b.165.1.1 132562 2j59M 168 67.34 2dtqA 223 68.59 b.1.1.2,b.1.1.2 131725,131726 2jqoA 108 69.71 2volA 207 72.03 1v61A 132 72.21 b.55.1.1 108389 1emsA 440 76.72 d.13.1.1,d.160.1.1 37520,42086 1ucsA 64 76.82 b.85.1.1 88466 1fgyA 127 78.23 b.55.1.1 26976 1rfeA 162 78.40 b.45.1.1 111796 1vhhA 162 80.79 d.65.1.2 39550 3bevB 99 81.09 2uz0A 263 82.34 2o2pA 517 82.67 1xx0A 127 84.19 b.55.1.1 122412 2dc0A 434 84.86 1dynA 125 86.57 b.55.1.1 26955 1ulrA 88 87.67 d.58.10.1 113283