# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 5.62e-24 3bo5A 290 2.67e-06 2igqA 285 3.34e-05 1n6aA 259 0.000110 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 0.000277 1ml9A 302 0.001301 b.85.7.1 79282 2o8jA 281 0.002682 2f69A 261 0.002760 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 0.004477 b.85.7.2 79963 2rfiA 285 0.01289 2dtcA 126 0.5250 1ntyA 311 0.8581 a.87.1.1,b.55.1.1 103873,103874 1ms9A 648 0.9082 b.29.1.15,b.68.1.1 85088,85089 1t92A 116 1.061 d.24.1.3 112326 2qkpA 151 1.683 2d5lA 706 2.175 1jftA 340 2.362 a.35.1.5,c.93.1.1 66652,66653 2p0dA 129 3.187 3cb2A 475 3.287 1u5fA 148 3.690 b.55.1.1 119542 1n1tA 641 3.763 b.29.1.15,b.68.1.1 79821,79822 2cfmA 561 6.371 2ys3A 137 6.459 1f3zA 161 6.625 b.84.3.1 28273 2bm0A 691 7.053 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1gpr 162 7.229 1gprA 162 8.332 b.84.3.1 28267 1yx2A 365 8.675 1hwxA 501 10.84 c.2.1.7,c.58.1.1 30250,33898 2op6A 152 11.11 2qv2A 342 12.14 1w9zA 283 12.44 1j2zA 270 13.51 b.81.1.1 90805 1btnA 106 14.53 b.55.1.1 26952 1qf6A 642 16.21 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1yr2A 741 17.33 2nutA 769 17.58 2geeA 203 18.05 1xsjA 778 19.90 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1t16A 427 20.02 f.4.3.4 106242 2dreA 180 20.29 1ui7A 638 25.51 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 1bdfA 235 25.52 d.74.3.1,d.181.1.1 39727,42602 1s1mA 545 26.40 c.23.16.1,c.37.1.10 105201,105202 1dbhA 354 27.95 a.87.1.1,b.55.1.1 18514,26967 1btn 106 27.98 2impA 479 29.88 1e43A 483 30.06 b.71.1.1,c.1.8.1 59217,59218 2podA 410 31.04 1wyuA 438 32.32 c.67.1.7 121452 1qfhA 212 32.35 b.1.18.10,b.1.18.10 21893,21894 2eceA 462 32.55 3bqcA 335 33.34 1vhhA 162 33.36 d.65.1.2 39550 1uf2A 1019 33.56 e.28.1.2 99289 1giqA 413 34.88 d.166.1.1,d.166.1.1 76224,76225 1btkA 169 36.12 b.55.1.1 26959 1zy9A 564 36.31 b.30.5.11,c.1.8.13 125813,125814 1yasA 257 38.14 c.69.1.20 34801 2durA 253 40.33 1twiA 434 40.56 b.49.2.3,c.1.6.1 107399,107400 1kz7A 353 42.58 a.87.1.1,b.55.1.1 73333,73334 2z20A 432 43.83 1q74A 303 43.85 c.134.1.1 96019 1musA 477 44.45 c.55.3.4 79494 1zpuA 534 44.77 2v31A 112 46.28 1gowA 489 46.70 c.1.8.4 28981 1f1gA 154 46.85 b.1.8.1 76153 1wj6A 101 47.04 d.15.2.2 114693 2qe0A 475 48.13 1vl2A 421 48.60 c.26.2.1,d.210.1.1 108708,108709 1l6xA 207 49.44 b.1.1.2,b.1.1.2 73642,73643 1kyaA 499 50.09 b.6.1.3,b.6.1.3,b.6.1.3 73203,73204,73205 1k3iA 656 50.35 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1euhA 475 50.54 c.82.1.1 35369 1kriA 186 50.56 b.29.1.14 72897 1wehA 171 50.73 c.129.1.1 114551 1lehA 364 51.13 c.2.1.7,c.58.1.1 30268,33916 1x31C 206 51.36 1pmyA 123 51.67 b.6.1.1 22888 2b5tI 432 51.88 e.1.1.1 127905 2acoA 173 52.00 1azvA 153 52.68 b.1.8.1 22247 2anpA 291 53.33 c.56.5.4 127056 1qwdA 177 54.56 b.60.1.1 96471 1e4mM 501 55.80 c.1.8.4 59226 1qv9A 283 56.01 c.127.1.1 96356 2imqX 282 56.47 1bu8A 452 58.08 b.12.1.2,c.69.1.19 23647,34795 1j0hA 588 58.78 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 2rkpA 335 59.61 1u5dA 108 59.94 b.55.1.1 119536 2hpuA 175 61.16 1u2bA 138 61.27 b.55.1.1 119474 1e3aB 560 61.37 1bw9A 356 63.24 c.2.1.7,c.58.1.1 30274,33922 1q0eA 152 63.57 b.1.8.1 95504 1r30A 369 64.40 c.1.28.1 96895 1upqA 123 64.47 b.55.1.1 113392 2e63A 170 64.73 2j1vA 151 65.81 1iloA 77 66.11 c.47.1.1 66205 1kjvB 100 67.53 b.1.1.2 77423 2bgiA 272 68.22 1ipcA 217 68.35 d.86.1.1 71257 1ppjB 439 69.22 d.185.1.1,d.185.1.1 104254,104255 1se8A 301 69.36 b.40.4.3 105448 1r0pA 312 70.63 d.144.1.7 96734 1mp4A 292 75.74 c.68.1.6 79376 2fh5B 214 77.28 c.37.1.8 133478 1ti6A 875 77.65 b.52.2.2,c.81.1.1 106974,106975 1eb7A 323 77.66 a.3.1.5,a.3.1.5 59404,59405 1e9pA 151 77.74 b.1.8.1 22215 2pu9C 111 77.92 1ao0A 459 78.63 c.61.1.1,d.153.1.1 34049,41816 1jk7A 323 80.19 d.159.1.3 63144 2pdrA 149 80.25 1gt1A 159 81.31 b.60.1.1 90515 2r6uA 148 82.68 1l3aA 228 83.57 d.18.1.2 73531 1oaoC 729 84.49 e.26.1.3 86746 1vavA 222 85.22 b.29.1.18 108472 1a3aA 148 85.40 d.112.1.1 40917 1vhh 162 85.69 2qedA 258 85.89 2p17A 277 87.10 1gw5S 142 88.40 d.110.4.2 70633 1bykA 255 88.60 c.93.1.1 35706 1mz5A 638 89.43 b.29.1.15,b.68.1.1 79679,79680