# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 4.09e-25 2igqA 285 5.70e-07 2o8jA 281 7.37e-07 3bo5A 290 2.96e-06 2rfiA 285 5.71e-06 1zkkA 167 3.35e-05 1n6aA 259 7.02e-05 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 0.000258 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 0.000386 b.85.7.2 79963 1ml9A 302 0.000484 b.85.7.1 79282 2dtcA 126 0.3989 2agcA 162 0.4209 1u5fA 148 0.8115 b.55.1.1 119542 2p0dA 129 1.150 1t92A 116 1.833 d.24.1.3 112326 1btnA 106 2.923 b.55.1.1 26952 2h21A 440 4.446 a.166.1.1,b.85.7.3 135976,135977 2ag9A 164 4.631 1f3zA 161 5.207 b.84.3.1 28273 1gpr 162 5.300 1gprA 162 5.739 b.84.3.1 28267 1p0yA 444 5.964 a.166.1.1,b.85.7.3 87654,87655 1btn 106 6.246 1ntyA 311 7.097 a.87.1.1,b.55.1.1 103873,103874 1gydB 315 7.258 b.67.2.1 70751 2dfkA 402 8.669 1btkA 169 8.745 b.55.1.1 26959 1qqgA 264 9.462 b.55.1.2,b.55.1.2 26987,26988 1v7rA 186 9.97 c.51.4.1 100482 1kz7A 353 10.65 a.87.1.1,b.55.1.1 73333,73334 1dbhA 354 11.17 a.87.1.1,b.55.1.1 18514,26967 1l6xA 207 11.82 b.1.1.2,b.1.1.2 73642,73643 1giqA 413 12.14 d.166.1.1,d.166.1.1 76224,76225 2z0qA 346 12.83 1lk2B 99 13.51 b.1.1.2 91058 1r88A 280 14.57 c.69.1.3 97219 1txdA 385 15.26 a.87.1.1,b.55.1.1 107422,107423 1ki1B 352 16.50 a.87.1.1,b.55.1.1 72497,72498 1bdfA 235 16.77 d.74.3.1,d.181.1.1 39727,42602 2j3xA 431 18.70 1kjvB 100 19.41 b.1.1.2 77423 1who 96 23.51 1qs8A 329 23.66 b.50.1.2 26887 1upqA 123 23.92 b.55.1.1 113392 1kjwA 295 25.87 b.34.2.1,c.37.1.1 68643,68644 1ao7B 100 26.26 b.1.1.2 20697 2dtqA 223 26.79 b.1.1.2,b.1.1.2 131725,131726 1u5dA 108 27.21 b.55.1.1 119536 2vroA 532 27.75 2dreA 180 28.65 2acoA 173 28.91 1u2bA 138 29.66 b.55.1.1 119474 2volA 207 29.73 2ohcA 289 30.84 1pmyA 123 31.52 b.6.1.1 22888 2dynA 122 32.60 b.55.1.1 26957 1b7jA 66 32.65 b.85.1.1 28283 1k5nB 100 32.84 b.1.1.2 77268 2qe0A 475 33.92 2uz0A 263 35.48 2pdrA 149 37.18 1zm0A 114 38.69 b.55.1.1 125276 1b3bA 415 40.22 c.2.1.7,c.58.1.1 30244,33892 1hrdA 449 42.13 c.2.1.7,c.58.1.1 30219,33867 1fc2D 224 42.38 b.1.1.2,b.1.1.2 21516,21517 2i5fA 109 42.46 1ywsA 82 44.42 g.41.17.1 124163 1b26A 416 44.88 c.2.1.7,c.58.1.1 30232,33880 1o7fA 469 46.92 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1b55A 169 47.00 b.55.1.1 26963 2geyA 158 48.36 1xy7A 166 48.58 d.32.1.9 116215 1pfzA 380 49.48 b.50.1.2 26881 1whoA 96 52.69 b.7.3.1 23215 2v31A 112 55.79 1y55X 126 56.50 1ucsA 64 56.91 b.85.1.1 88466 3bevB 99 57.60 1dbqA 289 57.83 c.93.1.1 35666 1vetB 125 57.85 d.110.7.1 108554 1eazA 125 57.85 b.55.1.1 70113 1pls 113 59.89 1skoB 130 61.52 d.110.7.1 105677 1fc1A 224 63.20 b.1.1.2,b.1.1.2 21520,21521 1o20A 427 63.63 c.82.1.1 86556 1faoA 126 64.07 b.55.1.1 26974 1q0rA 298 64.72 c.69.1.28 95508 2j6lA 500 65.83 1vhhA 162 67.56 d.65.1.2 39550 2exnA 136 68.58 b.165.1.1 132562 1uzbA 516 73.17 c.82.1.1 100220 2jqoA 108 77.59 1b2pA 119 79.13 b.78.1.1 27998 1bnbA 38 79.19 g.9.1.1 44592 1hdmA 201 81.93 b.1.1.2,d.19.1.1 21583,38157 2e70A 71 82.97 2j6gA 266 84.00 2vbuA 136 84.52 1v61A 132 84.57 b.55.1.1 108389 2ntpA 342 85.41 2vdvE 246 86.04