# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 5.12e-24 2igqA 285 1.57e-06 2o8jA 281 2.25e-06 3bo5A 290 9.65e-06 2rfiA 285 1.38e-05 1zkkA 167 0.000104 1n6aA 259 0.000169 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 0.000293 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 0.000322 b.85.7.2 79963 1ml9A 302 0.000671 b.85.7.1 79282 2agcA 162 1.218 1v7rA 186 2.183 c.51.4.1 100482 1t92A 116 2.624 d.24.1.3 112326 2dtcA 126 2.696 2h21A 440 3.209 a.166.1.1,b.85.7.3 135976,135977 1u5fA 148 4.143 b.55.1.1 119542 2p0dA 129 8.126 1r88A 280 9.012 c.69.1.3 97219 1gydB 315 9.685 b.67.2.1 70751 1p0yA 444 12.83 a.166.1.1,b.85.7.3 87654,87655 1btnA 106 18.20 b.55.1.1 26952 2ag9A 164 20.69 1gpr 162 20.74 2qe0A 475 22.55 2dreA 180 23.01 1emsA 440 23.20 d.13.1.1,d.160.1.1 37520,42086 1gprA 162 24.24 b.84.3.1 28267 1f3zA 161 24.59 b.84.3.1 28273 1l6xA 207 26.38 b.1.1.2,b.1.1.2 73642,73643 2dfkA 402 27.02 1giqA 413 27.53 d.166.1.1,d.166.1.1 76224,76225 1hrdA 449 27.69 c.2.1.7,c.58.1.1 30219,33867 1txdA 385 30.04 a.87.1.1,b.55.1.1 107422,107423 2j3xA 431 30.30 1lk2B 99 31.87 b.1.1.2 91058 1btkA 169 32.34 b.55.1.1 26959 1ntyA 311 33.09 a.87.1.1,b.55.1.1 103873,103874 1o20A 427 33.16 c.82.1.1 86556 2uz0A 263 34.01 1b3bA 415 34.46 c.2.1.7,c.58.1.1 30244,33892 1btn 106 35.03 1b26A 416 37.56 c.2.1.7,c.58.1.1 30232,33880 1dbhA 354 38.24 a.87.1.1,b.55.1.1 18514,26967 2acoA 173 39.46 1bdfA 235 39.65 d.74.3.1,d.181.1.1 39727,42602 1u2bA 138 41.94 b.55.1.1 119474 1kz7A 353 42.86 a.87.1.1,b.55.1.1 73333,73334 1kjvB 100 44.24 b.1.1.2 77423 2ohcA 289 46.80 2j6gA 266 46.98 1qqgA 264 48.83 b.55.1.2,b.55.1.2 26987,26988 1ao7B 100 49.24 b.1.1.2 20697 2dtqA 223 50.77 b.1.1.2,b.1.1.2 131725,131726 2vroA 532 50.97 1q74A 303 57.76 c.134.1.1 96019 1u5dA 108 59.61 b.55.1.1 119536 1uzbA 516 59.67 c.82.1.1 100220 2pdrA 149 59.82 1k5nB 100 62.16 b.1.1.2 77268 1t90A 486 66.97 2dynA 122 67.97 b.55.1.1 26957 1q0rA 298 69.85 c.69.1.28 95508 1upqA 123 70.61 b.55.1.1 113392 2a6zA 222 71.07 b.29.1.13 126319 1ki1B 352 71.24 a.87.1.1,b.55.1.1 72497,72498 1yopA 83 73.79 g.41.17.1 123782 1who 96 75.99 2v31A 112 76.32 2dc0A 434 76.57 2volA 207 77.79 1jftA 340 78.32 a.35.1.5,c.93.1.1 66652,66653 1fc2D 224 79.65 b.1.1.2,b.1.1.2 21516,21517 1pls 113 79.76 1y55X 126 80.09 1v61A 132 80.60 b.55.1.1 108389 2z0qA 346 80.62 2o2pA 517 82.37 1f89A 291 82.85 d.160.1.1 64988 1b7jA 66 83.50 b.85.1.1 28283 1o7fA 469 84.38 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1dbqA 289 89.54 c.93.1.1 35666