# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 6.09e-22 2igqA 285 4.57e-06 2o8jA 281 4.88e-06 3bo5A 290 2.65e-05 2rfiA 285 2.98e-05 1zkkA 167 0.000250 1n6aA 259 0.000386 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 0.000539 b.76.2.1,b.85.7.1 133035,133036 1ml9A 302 0.000763 b.85.7.1 79282 1n3jA 119 0.001851 b.85.7.2 79963 2agcA 162 0.2091 1u5fA 148 1.507 b.55.1.1 119542 2h21A 440 1.706 a.166.1.1,b.85.7.3 135976,135977 2p0dA 129 1.949 2dtcA 126 2.154 1v7rA 186 2.532 c.51.4.1 100482 2ag9A 164 4.040 1t92A 116 4.414 d.24.1.3 112326 1btnA 106 6.718 b.55.1.1 26952 1p0yA 444 11.63 a.166.1.1,b.85.7.3 87654,87655 1btn 106 12.68 1r88A 280 14.48 c.69.1.3 97219 1dbhA 354 16.16 a.87.1.1,b.55.1.1 18514,26967 1giqA 413 16.75 d.166.1.1,d.166.1.1 76224,76225 1emsA 440 20.61 d.13.1.1,d.160.1.1 37520,42086 2j3xA 431 20.73 1kz7A 353 25.50 a.87.1.1,b.55.1.1 73333,73334 1l6xA 207 29.41 b.1.1.2,b.1.1.2 73642,73643 1hrdA 449 30.13 c.2.1.7,c.58.1.1 30219,33867 1gydB 315 31.00 b.67.2.1 70751 1u5dA 108 32.39 b.55.1.1 119536 2acoA 173 32.47 2pdrA 149 33.73 1btkA 169 34.88 b.55.1.1 26959 1xy7A 166 35.73 d.32.1.9 116215 1qqgA 264 36.91 b.55.1.2,b.55.1.2 26987,26988 2qe0A 475 37.56 1o20A 427 38.46 c.82.1.1 86556 1u2bA 138 39.44 b.55.1.1 119474 2z0qA 346 39.91 2dfkA 402 41.56 1who 96 42.53 1lk2B 99 43.90 b.1.1.2 91058 1gpr 162 45.00 1b26A 416 45.06 c.2.1.7,c.58.1.1 30232,33880 1txdA 385 45.41 a.87.1.1,b.55.1.1 107422,107423 1b3bA 415 46.15 c.2.1.7,c.58.1.1 30244,33892 1b7jA 66 48.36 b.85.1.1 28283 1gprA 162 49.09 b.84.3.1 28267 1zm0A 114 49.45 b.55.1.1 125276 2vroA 532 50.02 2a6zA 222 50.54 b.29.1.13 126319 1ki1B 352 52.58 a.87.1.1,b.55.1.1 72497,72498 2dc0A 434 52.72 1kjvB 100 53.31 b.1.1.2 77423 1upqA 123 55.84 b.55.1.1 113392 1uzbA 516 56.73 c.82.1.1 100220 1ao7B 100 57.19 b.1.1.2 20697 1vhhA 162 62.17 d.65.1.2 39550 2ohcA 289 62.95 2dtqA 223 63.13 b.1.1.2,b.1.1.2 131725,131726 1q74A 303 63.21 c.134.1.1 96019 2e70A 71 64.22 1ywsA 82 65.71 g.41.17.1 124163 2ntpA 342 66.65 1y55X 126 67.36 2i5fA 109 68.33 1f3zA 161 68.42 b.84.3.1 28273 2j6gA 266 69.77 1t90A 486 72.54 1ucsA 64 73.75 b.85.1.1 88466 2volA 207 73.84 1kjwA 295 73.95 b.34.2.1,c.37.1.1 68643,68644 1ntyA 311 77.22 a.87.1.1,b.55.1.1 103873,103874 1qwdA 177 77.49 b.60.1.1 96471 1k5nB 100 77.76 b.1.1.2 77268 1fc2D 224 81.05 b.1.1.2,b.1.1.2 21516,21517 1pls 113 81.34 1w9zA 283 81.84 1whoA 96 82.42 b.7.3.1 23215 1kafA 108 82.90 d.199.1.1 68372 1yopA 83 85.29 g.41.17.1 123782 2o2pA 517 88.09 1fc1A 224 89.17 b.1.1.2,b.1.1.2 21520,21521