# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 3.13e-22 2igqA 285 2.09e-06 2o8jA 281 3.18e-06 3bo5A 290 1.46e-05 2rfiA 285 1.46e-05 1zkkA 167 7.22e-05 1n6aA 259 0.000165 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 0.000507 b.76.2.1,b.85.7.1 133035,133036 1ml9A 302 0.000644 b.85.7.1 79282 1n3jA 119 0.001357 b.85.7.2 79963 2agcA 162 0.5123 2h21A 440 1.738 a.166.1.1,b.85.7.3 135976,135977 1t92A 116 2.236 d.24.1.3 112326 1u5fA 148 3.189 b.55.1.1 119542 2p0dA 129 4.212 1v7rA 186 4.478 c.51.4.1 100482 2ag9A 164 4.903 2dtcA 126 6.679 1p0yA 444 8.328 a.166.1.1,b.85.7.3 87654,87655 1gydB 315 9.844 b.67.2.1 70751 1giqA 413 10.43 d.166.1.1,d.166.1.1 76224,76225 1btnA 106 13.54 b.55.1.1 26952 1r88A 280 14.56 c.69.1.3 97219 2j3xA 431 15.26 1txdA 385 16.76 a.87.1.1,b.55.1.1 107422,107423 1dbhA 354 19.99 a.87.1.1,b.55.1.1 18514,26967 1l6xA 207 22.02 b.1.1.2,b.1.1.2 73642,73643 1kz7A 353 22.94 a.87.1.1,b.55.1.1 73333,73334 2qe0A 475 23.16 1btn 106 27.88 2dc0A 434 30.99 2acoA 173 32.20 1kjvB 100 33.03 b.1.1.2 77423 2z0qA 346 33.17 1gpr 162 33.75 1f3zA 161 37.57 b.84.3.1 28273 1lk2B 99 38.28 b.1.1.2 91058 1hrdA 449 39.10 c.2.1.7,c.58.1.1 30219,33867 1gprA 162 40.00 b.84.3.1 28267 2dfkA 402 40.12 1bdfA 235 40.24 d.74.3.1,d.181.1.1 39727,42602 1b7jA 66 41.26 b.85.1.1 28283 1u2bA 138 42.80 b.55.1.1 119474 1pmyA 123 44.27 b.6.1.1 22888 1t90A 486 45.41 1o20A 427 45.43 c.82.1.1 86556 1uzbA 516 45.61 c.82.1.1 100220 1upqA 123 45.63 b.55.1.1 113392 1ao7B 100 45.88 b.1.1.2 20697 2pdrA 149 46.84 1k5nB 100 46.85 b.1.1.2 77268 1q74A 303 47.60 c.134.1.1 96019 2a6zA 222 47.81 b.29.1.13 126319 2vroA 532 49.20 2o2pA 517 49.70 2v31A 112 51.06 1btkA 169 51.41 b.55.1.1 26959 1jftA 340 52.50 a.35.1.5,c.93.1.1 66652,66653 1qqgA 264 54.01 b.55.1.2,b.55.1.2 26987,26988 1ki1B 352 55.70 a.87.1.1,b.55.1.1 72497,72498 2j6gA 266 56.37 1b3bA 415 57.28 c.2.1.7,c.58.1.1 30244,33892 1emsA 440 57.84 d.13.1.1,d.160.1.1 37520,42086 1b26A 416 58.30 c.2.1.7,c.58.1.1 30232,33880 2dtqA 223 58.70 b.1.1.2,b.1.1.2 131725,131726 1v61A 132 60.36 b.55.1.1 108389 1dbqA 289 61.51 c.93.1.1 35666 1xy7A 166 62.61 d.32.1.9 116215 1ntyA 311 63.66 a.87.1.1,b.55.1.1 103873,103874 1who 96 66.08 2ohcA 289 66.15 1y55X 126 68.92 1ucsA 64 70.74 b.85.1.1 88466 1b2pA 119 71.86 b.78.1.1 27998 1fc2D 224 71.90 b.1.1.2,b.1.1.2 21516,21517 2ntpA 342 76.18 1kjwA 295 76.92 b.34.2.1,c.37.1.1 68643,68644 1u5dA 108 78.21 b.55.1.1 119536 1qs8A 329 81.41 b.50.1.2 26887 2e70A 71 82.65 2bjkA 516 83.94 1ywsA 82 85.42 g.41.17.1 124163