# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	2.87e-19		
2igqA	285	1.69e-05		
2o8jA	281	2.45e-05		
2rfiA	285	5.38e-05		
1zkkA	167	0.000184		
1n6aA	259	0.000601	b.76.2.1,b.85.7.1	80121,80122
1n3jA	119	0.000684	b.85.7.2	79963
2f69A	261	0.001024	b.76.2.1,b.85.7.1	133035,133036
3bo5A	290	0.001408		
1ml9A	302	0.004257	b.85.7.1	79282
2p0dA	129	2.007		
2agcA	162	2.479		
2dtcA	126	2.925		
2h21A	440	3.237	a.166.1.1,b.85.7.3	135976,135977
1u5fA	148	7.390	b.55.1.1	119542
1v7rA	186	9.561	c.51.4.1	100482
1txdA	385	10.04	a.87.1.1,b.55.1.1	107422,107423
1p0yA	444	11.46	a.166.1.1,b.85.7.3	87654,87655
2dreA	180	11.50		
2dfkA	402	12.80		
1pls	113	17.68		
1ki1B	352	17.93	a.87.1.1,b.55.1.1	72497,72498
1t92A	116	18.36	d.24.1.3	112326
1ntyA	311	21.32	a.87.1.1,b.55.1.1	103873,103874
1upqA	123	21.33	b.55.1.1	113392
2ohcA	289	22.51		
1i3uA	127	30.10	b.1.1.1	61636
1faoA	126	32.09	b.55.1.1	26974
1eazA	125	34.00	b.55.1.1	70113
1vhhA	162	35.71	d.65.1.2	39550
2ag9A	164	35.76		
1btnA	106	43.29	b.55.1.1	26952
1dbhA	354	43.42	a.87.1.1,b.55.1.1	18514,26967
1u5dA	108	45.95	b.55.1.1	119536
1mp8A	281	48.88	d.144.1.7	91384
2pdrA	149	50.42		
1fna	93	53.11		
1ridA	244	53.76	g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1	104943,104944,104945,104946
2fm9A	215	58.11	a.257.1.1	133770
1unqA	125	64.89	b.55.1.1	107968
2masA	314	65.63	c.70.1.1	34810
1bdfA	235	71.99	d.74.3.1,d.181.1.1	39727,42602
1wehA	171	72.08	c.129.1.1	114551
1btn	106	75.08		
2fnbA	95	75.11	b.1.2.1	21979
1ywsA	82	76.03	g.41.17.1	124163
1mvfA	135	78.30	b.1.1.1	85141
1vhh	162	79.39		
1nn5A	215	79.46	c.37.1.1	85892
1kqrA	179	83.28	b.29.1.14	72886
2jv3A	110	86.28		
1x05A	129	87.38	b.55.1.1	121543
1x1gA	129	87.54	b.55.1.1	121580
1kz7A	353	89.42	a.87.1.1,b.55.1.1	73333,73334