# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	9.72e-22		
2igqA	285	6.35e-06		
2o8jA	281	1.08e-05		
1zkkA	167	1.55e-05		
3bo5A	290	3.26e-05		
2rfiA	285	7.27e-05		
1n6aA	259	0.000245	b.76.2.1,b.85.7.1	80121,80122
1n3jA	119	0.000255	b.85.7.2	79963
2f69A	261	0.000495	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	0.000542	b.85.7.1	79282
2p0dA	129	1.116		
2h21A	440	1.170	a.166.1.1,b.85.7.3	135976,135977
2dtcA	126	2.526		
2agcA	162	2.916		
1u5fA	148	4.311	b.55.1.1	119542
1p0yA	444	6.964	a.166.1.1,b.85.7.3	87654,87655
1btnA	106	14.02	b.55.1.1	26952
2dreA	180	15.00		
2dfkA	402	15.92		
1txdA	385	17.05	a.87.1.1,b.55.1.1	107422,107423
1r88A	280	17.64	c.69.1.3	97219
2fm9A	215	18.29	a.257.1.1	133770
1v7rA	186	20.72	c.51.4.1	100482
1btn	106	23.28		
1fna	93	24.38		
2ag9A	164	25.47		
1uyrA	737	25.96	c.14.1.4,c.14.1.4	100188,100189
2ohcA	289	29.21		
1btkA	169	30.21	b.55.1.1	26959
1t92A	116	30.54	d.24.1.3	112326
1b7jA	66	30.73	b.85.1.1	28283
2geeA	203	30.92		
1bu8A	452	31.83	b.12.1.2,c.69.1.19	23647,34795
1u5dA	108	33.32	b.55.1.1	119536
1upqA	123	33.44	b.55.1.1	113392
1aye	401	38.68		
1bavA	309	39.10	c.56.5.1	33806
1pls	113	40.52		
1ten	90	41.04		
1ucsA	64	42.09	b.85.1.1	88466
1dbhA	354	42.40	a.87.1.1,b.55.1.1	18514,26967
1ywsA	82	47.08	g.41.17.1	124163
1ulrA	88	49.88	d.58.10.1	113283
2fk9A	157	50.38		
2fnbA	95	54.69	b.1.2.1	21979
2z0qA	346	55.69		
1x31D	99	59.51		
1zy9A	564	60.55	b.30.5.11,c.1.8.13	125813,125814
1wehA	171	62.82	c.129.1.1	114551
1q3oA	109	64.31	b.36.1.1	95700
1emsA	440	66.51	d.13.1.1,d.160.1.1	37520,42086
2vrwB	406	67.19		
1faoA	126	67.55	b.55.1.1	26974
1b7kA	66	67.95	b.85.1.1	28306
2uz0A	263	68.73		
1skoB	130	68.76	d.110.7.1	105677
1i3uA	127	68.97	b.1.1.1	61636
1vetB	125	69.10	d.110.7.1	108554
2ch4W	151	70.92	b.40.7.1	130451
1d2tA	231	72.06	a.111.1.1	19052
1b7iA	66	72.54	b.85.1.1	28288
1ntyA	311	72.61	a.87.1.1,b.55.1.1	103873,103874
1ur4A	399	74.13	c.1.8.3	113402
1w2iA	91	74.21	d.58.10.1	109127
1u2bA	138	74.53	b.55.1.1	119474
1vhhA	162	78.07	d.65.1.2	39550
1kz7A	353	80.40	a.87.1.1,b.55.1.1	73333,73334
1pixA	587	80.51	c.14.1.4,c.14.1.4	118578,118579
1npuA	117	81.36	b.1.1.1	92038
1hg7A	66	83.03	b.85.1.1	28280
1zgdA	312	84.17		
2vroA	532	85.28		
2jqoA	108	86.17		
1e87A	118	89.10	d.169.1.1	42327