# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 1.93e-16 1zkkA 167 5.73e-07 2igqA 285 8.30e-07 2o8jA 281 2.90e-06 2rfiA 285 5.92e-06 3bo5A 290 2.96e-05 2f69A 261 0.000185 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 0.000388 b.76.2.1,b.85.7.1 80121,80122 1ml9A 302 0.001708 b.85.7.1 79282 1n3jA 119 0.002380 b.85.7.2 79963 1vctA 205 3.138 a.7.12.1,d.286.1.1 119986,119987 2aefA 234 4.051 1hx6A 394 4.105 b.121.2.1,b.121.2.1 58995,58996 1gkfB 557 4.652 2ag9A 164 6.470 1e3aB 560 6.921 1ajqB 557 7.599 1gk9B 557 7.933 1lnqA 336 8.488 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1pytA 94 9.715 d.58.3.1 39064 1mt6A 280 9.97 b.76.2.1,b.85.7.1 79446,79447 1z4rA 168 10.36 d.108.1.1 124444 1boy 219 12.68 1dutA 133 14.55 b.85.4.1 28355 2rdkA 109 14.93 1b7jA 66 14.94 b.85.1.1 28283 1luzA 88 16.41 b.40.4.5 74271 1a21A 219 16.72 b.1.2.1,b.1.2.1 21967,21968 3c8cA 240 16.85 2ouaA 188 17.45 1hg7A 66 18.21 b.85.1.1 28280 1pcaA 95 20.17 d.58.3.1 39063 2geeA 203 20.51 1ucsA 64 20.65 b.85.1.1 88466 1b7kA 66 23.49 b.85.1.1 28306 2z8fA 412 25.91 1g2lA 235 25.97 b.47.1.2 65112 2qg3A 208 26.69 1jovA 270 28.37 b.30.5.7 84192 2dvkA 188 31.01 2ohcA 289 31.01 1z8gA 372 31.24 b.47.1.2,d.170.1.2 124697,124698 3cpnA 330 32.24 1tl2A 236 33.25 b.67.1.1 27541 2a9mH 126 33.88 1khxA 227 34.13 b.26.1.1 68631 2glwA 92 35.50 1i6uA 130 36.13 d.140.1.1 61850 2vd8A 391 36.71 1imtA 80 36.80 g.3.10.1,g.3.10.1 44201,44202 1bd0A 388 38.95 b.49.2.2,c.1.6.1 26480,28642 1tulA 108 39.40 b.85.5.1 28373 1f7dA 136 39.94 b.85.4.1 28353 2vsmB 140 40.41 1h91A 180 41.99 b.60.1.1 60805 2hd3A 103 45.23 1b7iA 66 49.29 b.85.1.1 28288 2ea3A 189 49.58 1regX 122 50.72 d.58.27.1 39406 1pdr 99 50.90 1a1xA 108 51.49 b.63.1.1 27514 3c0tA 207 51.50 1q3oA 109 52.18 b.36.1.1 95700 1a1x 108 52.77 1i4uA 181 53.04 b.60.1.1 61732 1o9yA 84 53.43 b.139.1.1 92692 2hftA 218 53.73 b.1.2.1,b.1.2.1 21951,21952 2ol1A 147 56.73 1a7oH 116 57.12 b.1.1.1 19943 1s1mA 545 58.00 c.23.16.1,c.37.1.10 105201,105202 1t8oA 245 58.89 b.47.1.2 119187 2h2wA 312 59.10 2ocsA 88 59.28 4dpvZ 584 59.70 b.121.5.2 23377 1yf5L 254 60.38 c.55.1.11,c.55.1.11 123049,123050 1fm2B 520 61.78 2plgA 163 62.28 2pnlA 203 66.15 2aaiB 262 67.34 b.42.2.1,b.42.2.1 25561,25562 2gqwA 408 68.75 2hft 218 70.42 2e3nA 255 70.51 2pytA 133 72.69 2ae5B 528 73.17 1wcdJ 441 74.72 b.121.4.9 120887 2bsyA 278 74.87 b.85.4.1,b.85.4.1 129129,129130 1or0B 528 74.99 2q4mA 217 76.05 d.23.1.2 139870 1gxyA 226 76.33 d.166.1.3 76380 1sjiA 350 76.44 1j7nA 776 77.08 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 2b5iB 214 77.90 b.1.2.1,b.1.2.1 127896,127897 2p08A 115 78.58 1gk1B 522 78.90 2drvA 200 79.93 1za7A 165 80.40 1a7qH 116 81.52 b.1.1.1 19955 1eu8A 409 82.62 c.94.1.1 59502 2vdxA 373 83.17 1m2tB 263 83.99 b.42.2.1,b.42.2.1 84762,84763 1m4iA 181 84.71 d.108.1.1 74457 2a9nH 126 85.91 2bokA 241 88.13 b.47.1.2 128916 1xafA 246 88.25 d.194.1.2 109535