# List of top-scoring protein chains for TR435.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2o8jA	281	9.15e-16		
2rfiA	285	2.36e-15		
2r3aA	300	9.15e-15		
2qpwA	149	8.98e-14		
1mvhA	299	9.08e-14	b.85.7.1	79500
2jv0A	163	1.11e-13		
3bo5A	290	2.83e-13		
2bqzA	161	6.24e-13		
1zkkA	167	7.11e-13		
1ml9A	302	2.45e-12	b.85.7.1	79282
1n3jA	119	7.76e-07	b.85.7.2	79963
3cbpA	256	6.39e-05		
1n6aA	259	6.63e-05	b.76.2.1,b.85.7.1	80121,80122
2f69A	261	6.72e-05	b.76.2.1,b.85.7.1	133035,133036
1xqhA	264	6.88e-05	b.76.2.1,b.85.7.1	115846,115847
1n6cA	297	8.23e-05	b.76.2.1,b.85.7.1	80123,80124
1h3iA	293	0.000106	b.76.2.1,b.85.7.1	76635,76636
1mufA	257	0.000285	b.76.2.1,b.85.7.1	79483,79484
1mt6A	280	0.000310	b.76.2.1,b.85.7.1	79446,79447
2pwzA	312	20.26	c.2.1.5,d.162.1.1	139766,139767
2cmdA	312	27.09	c.2.1.5,d.162.1.1	30135,42102
7fabH	217	30.09	b.1.1.1,b.1.1.2	19777,20887
1ovyA	120	43.04	c.55.4.1	93624
1dqgA	135	45.63	b.42.2.2	25579
1fwuA	134	46.18	b.42.2.2	25580
2iugA	120	46.89		
2gfiA	458	47.41		
1kj1D	109	52.87	b.78.1.1	68639
1rlyA	60	53.69	g.41.3.1	104988
1z0fA	179	55.03	c.37.1.8	124313
1ta3B	303	55.16	c.1.8.3	106732
1dl6A	58	57.73	g.41.3.1	45207
1bwuQ	109	61.36	b.78.1.1	27996
1ib6A	312	61.46	c.2.1.5,d.162.1.1	62146,62147
2aedA	181	61.94	c.37.1.8	126619
1x7aC	235	63.99	b.47.1.2	121781
1wjmA	123	65.02	b.55.1.1	114702
1o8bA	219	67.32	c.124.1.4,d.58.40.1	81180,81181
2oauA	306	67.57	b.38.1.3,d.58.43.1,f.34.1.1	138978,138979,138980
3c4cA	280	71.21		
2pnaA	104	75.92	d.93.1.1	40501
1uwjA	276	77.91	d.144.1.7	100125
2fb8A	281	78.94		
1x63A	82	81.35	g.39.1.3,g.39.1.3	121731,121732
2o9eA	234	86.34		
2o9dA	234	86.75