# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	6.04e-21		
3bo5A	290	9.22e-21		
2rfiA	285	1.01e-20		
1zkkA	167	1.28e-20		
2igqA	285	3.50e-20		
2r3aA	300	3.99e-20		
2o8jA	281	5.92e-20		
1ml9A	302	3.51e-19	b.85.7.1	79282
2f69A	261	7.25e-19	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	1.85e-18	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	3.43e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	3.62e-07	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	1.304	b.95.1.1	126717
1lm5A	214	6.707	d.211.2.1	74029
2bsyA	278	7.385	b.85.4.1,b.85.4.1	129129,129130
1rutX	188	8.200	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1eaqA	140	16.32	b.2.5.6	76144
1vkkA	154	16.39	d.109.1.2	108669
1zxuA	217	16.98	d.23.1.2	125796
1dunA	134	19.56	b.85.4.1	28371
1svb	395	21.01		
1q3oA	109	21.16	b.36.1.1	95700
1lm7A	248	22.75	d.211.2.1	74031
2a19B	284	23.03		
2dafA	118	26.38		
2bazA	142	26.56		
2pcxA	220	27.99		
2p52A	196	34.42		
2q4mA	217	35.14	d.23.1.2	139870
1fo0A	116	36.39	b.1.1.1	20610
2zdrA	349	36.67		
2psoA	237	38.33		
2pn1A	331	41.79		
1v8yA	170	43.04	d.113.1.1	113581
1dpoA	223	43.05	b.47.1.2	25975
1r13A	148	43.12	d.169.1.1,h.1.1.1	96782,96783
1buuA	168	44.44	d.169.1.1,h.1.1.1	42366,45388
1s9rA	410	46.04	d.126.1.4	98758
2fwvA	226	46.93		
1wqjB	80	47.36		
2engA	210	50.19	b.52.1.1	26895
1vm9A	111	50.61	b.33.1.1	108886
1gpr	162	50.98		
2f57A	317	52.27		
1xuuA	349	52.89	b.85.1.1,c.1.10.6	116067,116068
2eng	210	54.17		
1vliA	385	54.18	b.85.1.1,c.1.10.6	108830,108831
1jugA	125	57.06	d.2.1.2	36587
1gmuA	143	58.11	b.107.1.1,d.58.38.1	65335,65336
3cqbA	107	58.40		
1aipA	405	58.52	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
1tn3A	137	58.93	d.169.1.1	42423
2bfxA	284	59.58		
1vclA	432	59.62	b.42.2.1,b.42.2.1,d.281.1.1	108498,108499,108500
1rzhH	260	62.03	b.41.1.1,f.23.10.1	98162,98163
2gb4A	252	62.73		
1qpcA	279	64.45	d.144.1.7	41685
1tkiA	321	68.41	d.144.1.7	41638
1gveA	327	68.73	c.1.7.1	70597
2q7dA	346	68.92		
1hg7A	66	69.22	b.85.1.1	28280
1oqjA	97	69.93	d.217.1.1	93417
1jpaA	312	71.36	d.144.1.7	67011
1uu3A	310	72.13	d.144.1.7	99999
2qsfA	533	74.00		
2fbdA	122	76.37		
1uolA	219	76.76	b.2.5.2	99695
2uzcA	88	77.93		
1w50A	411	78.23	b.50.1.2	109173
1em2A	229	80.04	d.129.3.2	41321
2bdwA	362	81.22		
2jz8A	87	83.77		
2ganA	190	84.14	d.108.1.1	134889
1ucsA	64	84.94	b.85.1.1	88466
2biqA	219	85.45		
1s98A	107	86.61	b.124.1.1	105377
2j3xA	431	87.27		
2qecA	204	88.91		
2ioiA	201	89.31