# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2rfiA	285	1.21e-21		
3bo5A	290	1.75e-21		
1zkkA	167	1.87e-21		
2qpwA	149	4.02e-21		
2igqA	285	4.89e-21		
2r3aA	300	7.62e-21		
2o8jA	281	8.77e-21		
1ml9A	302	6.85e-20	b.85.7.1	79282
2f69A	261	1.23e-19	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	1.48e-19	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	1.82e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	1.04e-07	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	1.545	b.95.1.1	126717
1lm5A	214	10.45	d.211.2.1	74029
1rutX	188	10.75	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1vkkA	154	13.46	d.109.1.2	108669
1tkiA	321	14.20	d.144.1.7	41638
2bsyA	278	15.16	b.85.4.1,b.85.4.1	129129,129130
2f57A	317	15.25		
2dafA	118	16.78		
1lm7A	248	21.61	d.211.2.1	74031
1qpcA	279	21.93	d.144.1.7	41685
1dunA	134	23.49	b.85.4.1	28371
2bazA	142	25.99		
2q4mA	217	26.27	d.23.1.2	139870
2bfxA	284	29.10		
1eaqA	140	29.23	b.2.5.6	76144
2pcxA	220	29.40		
1zxuA	217	29.43	d.23.1.2	125796
1q3oA	109	30.04	b.36.1.1	95700
1jpaA	312	30.11	d.144.1.7	67011
2bdwA	362	30.73		
1r13A	148	30.86	d.169.1.1,h.1.1.1	96782,96783
1s9rA	410	31.26	d.126.1.4	98758
2a19B	284	32.65		
1v8yA	170	36.90	d.113.1.1	113581
2b79A	144	38.35		
1wqjB	80	38.97		
1aipA	405	39.53	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
1w7cA	747	39.78		
2dg1A	333	40.52	b.68.6.1	131493
1rzhH	260	41.12	b.41.1.1,f.23.10.1	98162,98163
1uu3A	310	41.22	d.144.1.7	99999
1s98A	107	42.73	b.124.1.1	105377
1tn3A	137	44.28	d.169.1.1	42423
1buuA	168	46.62	d.169.1.1,h.1.1.1	42366,45388
1dpoA	223	46.81	b.47.1.2	25975
2c30A	321	51.04		
1yhvA	297	52.29		
1s9jA	341	53.08	d.144.1.7	112049
2p52A	196	53.59		
3cqbA	107	53.84		
1oqjA	97	54.93	d.217.1.1	93417
2p35A	259	58.08		
2zdrA	349	59.42		
1svb	395	60.28		
1ia8A	289	60.64	d.144.1.7	62112
1jksA	294	62.09	d.144.1.7	71710
2pn1A	331	62.44		
2ganA	190	63.66	d.108.1.1	134889
2qecA	204	63.67		
2orzA	314	64.90		
2p3wA	112	66.12		
1vm9A	111	66.52	b.33.1.1	108886
1fo0A	116	68.17	b.1.1.1	20610
3b89A	252	69.12		
1p4oA	322	70.20	d.144.1.7	87775
1vliA	385	73.21	b.85.1.1,c.1.10.6	108830,108831
2gb4A	252	75.11		
1gz8A	299	77.37	d.144.1.7	83405
1hg7A	66	77.59	b.85.1.1	28280
2jz8A	87	78.36		
1em2A	229	79.15	d.129.3.2	41321
2o1qA	145	80.34		
1xuuA	349	82.61	b.85.1.1,c.1.10.6	116067,116068
2vphA	100	83.01		
2i5oA	39	84.53		
2cveA	191	85.27	d.14.1.11,d.58.11.2	130869,130870
2uzcA	88	89.75		
1mqoA	227	89.86	d.157.1.1	103846