# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1zkkA 167 2.66e-20 2qpwA 149 5.96e-20 2rfiA 285 9.43e-20 3bo5A 290 9.56e-20 2r3aA 300 1.12e-19 2igqA 285 1.43e-19 2o8jA 281 2.64e-19 2f69A 261 1.12e-18 b.76.2.1,b.85.7.1 133035,133036 1ml9A 302 1.30e-18 b.85.7.1 79282 1n6aA 259 2.59e-18 b.76.2.1,b.85.7.1 80121,80122 1p0yA 444 2.37e-08 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 9.90e-08 a.166.1.1,b.85.7.3 135976,135977 1vm9A 111 4.280 b.33.1.1 108886 1rutX 188 5.498 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2ag4A 164 5.988 b.95.1.1 126717 1lm5A 214 6.124 d.211.2.1 74029 2bazA 142 6.231 1svb 395 7.687 1lm7A 248 10.82 d.211.2.1 74031 2orzA 314 10.84 2dafA 118 13.60 2bsyA 278 13.65 b.85.4.1,b.85.4.1 129129,129130 2engA 210 15.78 b.52.1.1 26895 1vclA 432 15.92 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1vliA 385 16.56 b.85.1.1,c.1.10.6 108830,108831 1rzhH 260 17.44 b.41.1.1,f.23.10.1 98162,98163 2f57A 317 18.93 2vphA 100 20.30 2nutB 753 20.34 1eaqA 140 20.54 b.2.5.6 76144 1yhvA 297 20.71 1e2wA 251 20.94 b.2.6.1,b.84.2.2 22466,28252 1r0uA 148 21.24 b.60.1.5 96741 1l8fA 207 21.28 b.52.1.1 84537 2p3wA 112 21.65 2eng 210 21.86 1gmuA 143 22.13 b.107.1.1,d.58.38.1 65335,65336 2zdrA 349 22.33 1xuuA 349 25.51 b.85.1.1,c.1.10.6 116067,116068 1hg7A 66 26.14 b.85.1.1 28280 1vkkA 154 26.30 d.109.1.2 108669 1v8yA 170 27.85 d.113.1.1 113581 1munA 225 29.07 a.96.1.2 18744 1h4xA 117 29.69 c.13.2.1 60626 1wqjB 80 30.01 1oqjA 97 30.47 d.217.1.1 93417 2q3wA 111 31.09 b.33.1.1 139813 2a4vA 159 31.26 c.47.1.10 126163 2cveA 191 32.40 d.14.1.11,d.58.11.2 130869,130870 2i5nH 258 32.46 b.41.1.1,f.23.10.1 137064,137065 1ucsA 64 36.25 b.85.1.1 88466 1ybyA 215 36.92 1s98A 107 40.83 b.124.1.1 105377 1dunA 134 41.08 b.85.4.1 28371 1kxgA 152 41.42 b.22.1.1 73145 1yj1A 76 42.13 k.45.1.1 123377 2dtcA 126 44.48 2gekA 406 47.68 1q3oA 109 47.79 b.36.1.1 95700 1n7eA 97 53.79 b.36.1.1 91691 2uzcA 88 54.10 1tkiA 321 54.20 d.144.1.7 41638 1pqhA 143 54.81 b.52.2.1 95017 1n13B 113 56.09 1o0wA 252 56.27 a.149.1.1,d.50.1.1 80751,80752 2qo4A 126 58.91 2j7tA 302 59.17 2pn1A 331 60.93 2i5oA 39 60.94 1rfsA 139 61.51 b.33.1.1 24434 1dv1A 449 62.58 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1h2wA 710 63.81 b.69.7.1,c.69.1.4 76596,76597 2pktA 91 64.46 2e63A 170 65.21 2yzsA 315 65.32 1dxrH 258 65.90 b.41.1.1,f.23.10.1 25456,43433 1gpr 162 65.92 2pcxA 220 65.96 2dg1A 333 66.31 b.68.6.1 131493 1buuA 168 66.52 d.169.1.1,h.1.1.1 42366,45388 1j2lA 70 67.19 g.20.1.1 90787 2bdwA 362 67.52 1qpcA 279 68.57 d.144.1.7 41685 2psoA 237 69.05 2c6uA 122 70.67 2gb4A 252 70.74 2pw0A 397 71.01 2p52A 196 72.00 2huhA 147 73.10 2he2A 102 73.60 2q3gA 89 74.12 2q4mA 217 75.09 d.23.1.2 139870 1zxuA 217 75.28 d.23.1.2 125796 1z6bA 154 75.58 d.38.1.6 124510 2c30A 321 76.37 1s9jA 341 77.64 d.144.1.7 112049 2jrrA 67 77.65 1j7gA 144 78.25 c.110.1.1 84130 2j0iA 303 81.21 1thtA 305 81.85 c.69.1.13 34711 1dv2A 452 81.99 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1b2pA 119 82.01 b.78.1.1 27998 1a8lA 226 82.46 c.47.1.2,c.47.1.2 32777,32778 1faaA 124 83.13 c.47.1.1 32738 1earA 147 83.25 b.107.1.1,d.58.38.1 64875,64876 2e2dC 180 84.40 b.40.3.1 131980 2biqA 219 85.67 3fruA 269 86.91 b.1.1.2,d.19.1.1 20657,38150 1wcdJ 441 87.76 b.121.4.9 120887 2bf6A 449 89.26