# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bo5A	290	3.04e-22		
2qpwA	149	3.16e-22		
1zkkA	167	3.33e-22		
2rfiA	285	6.34e-22		
2r3aA	300	1.11e-21		
2igqA	285	1.99e-21		
2o8jA	281	6.53e-21		
2f69A	261	1.05e-20	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	3.21e-20	b.85.7.1	79282
1n6aA	259	1.04e-19	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	5.20e-09	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	7.26e-08	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	1.640	b.95.1.1	126717
1lm5A	214	7.270	d.211.2.1	74029
2pn1A	331	8.808		
1rutX	188	11.78	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1vm9A	111	12.13	b.33.1.1	108886
1vkkA	154	14.64	d.109.1.2	108669
2bsyA	278	18.72	b.85.4.1,b.85.4.1	129129,129130
2dafA	118	19.63		
2pcxA	220	21.08		
1lm7A	248	22.69	d.211.2.1	74031
1svb	395	27.15		
2p52A	196	27.18		
1s9rA	410	28.44	d.126.1.4	98758
1wqjB	80	28.61		
1jofA	365	30.64	b.69.10.1	71775
1dpoA	223	37.26	b.47.1.2	25975
2b79A	144	38.87		
1dunA	134	41.42	b.85.4.1	28371
2bazA	142	41.95		
1gpr	162	43.94		
1fo0A	116	45.91	b.1.1.1	20610
2engA	210	48.64	b.52.1.1	26895
2f57A	317	49.17		
1uolA	219	49.45	b.2.5.2	99695
2dpfA	115	50.90		
1eaqA	140	51.71	b.2.5.6	76144
2eng	210	54.27		
1rzhH	260	56.93	b.41.1.1,f.23.10.1	98162,98163
2zdrA	349	60.09		
2p3wA	112	60.84		
1q3oA	109	62.56	b.36.1.1	95700
2bfxA	284	64.24		
1ktgA	138	65.54	d.113.1.1	72972
1r13A	148	65.78	d.169.1.1,h.1.1.1	96782,96783
2ioiA	201	65.88		
1wleA	501	66.25		
1vliA	385	68.02	b.85.1.1,c.1.10.6	108830,108831
1xuuA	349	69.31	b.85.1.1,c.1.10.6	116067,116068
2ouxA	286	69.77		
2j21A	219	70.58		
1ppjE	196	71.42	b.33.1.1,f.23.12.1	104260,104261
1f3zA	161	72.66	b.84.3.1	28273
1buuA	168	73.42	d.169.1.1,h.1.1.1	42366,45388
1l8fA	207	73.96	b.52.1.1	84537
2biqA	219	73.98		
1v8yA	170	75.46	d.113.1.1	113581
1b2pA	119	76.74	b.78.1.1	27998
2vphA	100	78.43		
1jugA	125	78.92	d.2.1.2	36587
1ki1B	352	79.24	a.87.1.1,b.55.1.1	72497,72498
2ac0A	200	79.24	b.2.5.2	126539
1h4xA	117	79.63	c.13.2.1	60626
2c30A	321	79.67		
1yhvA	297	80.07		
1yj1A	76	80.51	k.45.1.1	123377
2orzA	314	81.92		
1gveA	327	84.86	c.1.7.1	70597
1dxrH	258	87.02	b.41.1.1,f.23.10.1	25456,43433
1jpcA	109	87.46	b.78.1.1	27986
1dv1A	449	88.02	b.84.2.1,c.30.1.1,d.142.1.2	28234,31641,41486
2jz8A	87	88.13		
1oqjA	97	88.80	d.217.1.1	93417