# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bo5A	290	2.71e-22		
1zkkA	167	3.38e-22		
2qpwA	149	3.61e-22		
2rfiA	285	4.79e-22		
2r3aA	300	9.95e-22		
2igqA	285	1.24e-21		
2o8jA	281	4.42e-21		
2f69A	261	8.86e-21	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	2.22e-20	b.85.7.1	79282
1n6aA	259	7.49e-20	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	6.12e-09	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	3.99e-08	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	2.915	b.95.1.1	126717
1lm5A	214	5.523	d.211.2.1	74029
1rutX	188	10.95	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1svb	395	11.48		
2pn1A	331	12.11		
1vkkA	154	12.21	d.109.1.2	108669
2bsyA	278	14.16	b.85.4.1,b.85.4.1	129129,129130
2pcxA	220	15.36		
2p52A	196	18.57		
2dafA	118	19.50		
1lm7A	248	20.36	d.211.2.1	74031
2bazA	142	25.67		
1s9rA	410	27.47	d.126.1.4	98758
1vm9A	111	28.73	b.33.1.1	108886
1dunA	134	29.56	b.85.4.1	28371
1eaqA	140	30.83	b.2.5.6	76144
1dpoA	223	32.73	b.47.1.2	25975
1wqjB	80	38.31		
1uolA	219	38.35	b.2.5.2	99695
1w7cA	747	39.72		
2f57A	317	40.75		
2zdrA	349	43.17		
2b79A	144	44.78		
1xuuA	349	46.86	b.85.1.1,c.1.10.6	116067,116068
1gpr	162	47.20		
2j21A	219	48.23		
2ioiA	201	49.61		
1tn3A	137	51.18	d.169.1.1	42423
1buuA	168	52.40	d.169.1.1,h.1.1.1	42366,45388
1rzhH	260	53.40	b.41.1.1,f.23.10.1	98162,98163
1v8yA	170	55.46	d.113.1.1	113581
1fo0A	116	57.78	b.1.1.1	20610
2biqA	219	58.62		
1r13A	148	60.32	d.169.1.1,h.1.1.1	96782,96783
1wleA	501	60.63		
2ac0A	200	63.15	b.2.5.2	126539
2bfxA	284	63.86		
1q3oA	109	65.98	b.36.1.1	95700
1vliA	385	66.62	b.85.1.1,c.1.10.6	108830,108831
1yhvA	297	68.17		
2orzA	314	69.81		
2c30A	321	71.87		
2ouxA	286	73.20		
2vphA	100	73.80		
2hr7A	486	76.47		
1kxgA	152	80.87	b.22.1.1	73145
2fwvA	226	84.47		
2bf6A	449	85.44		
2a19B	284	86.47		
2engA	210	86.64	b.52.1.1	26895
1gveA	327	86.98	c.1.7.1	70597
1ztpA	251	88.33	d.86.1.2	125649
1f3zA	161	89.05	b.84.3.1	28273
1jpaA	312	89.22	d.144.1.7	67011
1jugA	125	89.28	d.2.1.2	36587