# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	1.24e-21		
1zkkA	167	1.61e-21		
3bo5A	290	2.09e-21		
2rfiA	285	4.27e-21		
2r3aA	300	5.20e-21		
2igqA	285	1.00e-20		
2o8jA	281	3.37e-20		
2f69A	261	5.94e-20	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	1.07e-19	b.85.7.1	79282
1n6aA	259	4.43e-19	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	1.12e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	9.80e-08	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	3.422	b.95.1.1	126717
1lm5A	214	6.864	d.211.2.1	74029
1svb	395	7.686		
2bsyA	278	10.21	b.85.4.1,b.85.4.1	129129,129130
1vkkA	154	10.77	d.109.1.2	108669
1rutX	188	14.68	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
2pn1A	331	17.59		
2pcxA	220	19.01		
2p52A	196	20.70		
2dafA	118	22.51		
1lm7A	248	22.84	d.211.2.1	74031
1dunA	134	26.22	b.85.4.1	28371
2bazA	142	26.50		
1vm9A	111	27.27	b.33.1.1	108886
1wqjB	80	28.48		
1s9rA	410	28.87	d.126.1.4	98758
1eaqA	140	29.57	b.2.5.6	76144
1fo0A	116	34.70	b.1.1.1	20610
1gpr	162	38.67		
1dpoA	223	40.45	b.47.1.2	25975
1w7cA	747	47.13		
1uolA	219	51.60	b.2.5.2	99695
1vliA	385	52.33	b.85.1.1,c.1.10.6	108830,108831
2zdrA	349	52.55		
2f57A	317	52.55		
1ktgA	138	54.80	d.113.1.1	72972
2b79A	144	55.78		
1xuuA	349	56.55	b.85.1.1,c.1.10.6	116067,116068
1rzhH	260	57.11	b.41.1.1,f.23.10.1	98162,98163
2biqA	219	57.50		
1wleA	501	61.98		
2ioiA	201	63.19		
1tn3A	137	63.36	d.169.1.1	42423
1gveA	327	65.84	c.1.7.1	70597
2ouxA	286	67.43		
2ac0A	200	67.63	b.2.5.2	126539
2q4mA	217	68.10	d.23.1.2	139870
1q3oA	109	68.21	b.36.1.1	95700
2j21A	219	69.34		
1zoyB	252	71.79		
1f3zA	161	72.61	b.84.3.1	28273
1buuA	168	72.89	d.169.1.1,h.1.1.1	42366,45388
1jofA	365	73.56	b.69.10.1	71775
2fwvA	226	74.18		
1jugA	125	76.67	d.2.1.2	36587
1v8yA	170	77.38	d.113.1.1	113581
2orzA	314	77.98		
1kxgA	152	78.58	b.22.1.1	73145
1r13A	148	79.03	d.169.1.1,h.1.1.1	96782,96783
1ygaA	342	81.24		
2c30A	321	86.74		
2engA	210	87.97	b.52.1.1	26895
2bf6A	449	88.96