# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2rfiA	285	2.10e-20		
3bo5A	290	6.16e-20		
2qpwA	149	1.26e-19		
2r3aA	300	1.42e-19		
1zkkA	167	1.43e-19		
2igqA	285	1.46e-19		
2o8jA	281	1.85e-19		
1ml9A	302	1.24e-18	b.85.7.1	79282
2f69A	261	8.35e-18	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	3.92e-17	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	4.84e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	8.37e-08	a.166.1.1,b.85.7.3	135976,135977
1lm5A	214	7.284	d.211.2.1	74029
2ag4A	164	8.257	b.95.1.1	126717
1q3oA	109	14.63	b.36.1.1	95700
1s9rA	410	18.60	d.126.1.4	98758
2pn1A	331	20.13		
2dafA	118	21.06		
1vkkA	154	26.19	d.109.1.2	108669
2vphA	100	28.49		
1rutX	188	34.88	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1em2A	229	36.15	d.129.3.2	41321
1qpcA	279	36.52	d.144.1.7	41685
2pcxA	220	40.63		
2p52A	196	41.39		
1lm7A	248	44.13	d.211.2.1	74031
2i1nA	102	44.69		
1munA	225	49.78	a.96.1.2	18744
2jikA	101	50.80		
2pktA	91	53.48		
2uzcA	88	54.26		
2bdtA	189	54.52	c.37.1.25	128344
2awxA	105	56.17		
1dcoA	104	57.03	d.74.1.1	39680
1vclA	432	58.66	b.42.2.1,b.42.2.1,d.281.1.1	108498,108499,108500
1vm9A	111	60.60	b.33.1.1	108886
1n7eA	97	61.36	b.36.1.1	91691
1hg7A	66	62.48	b.85.1.1	28280
1oneA	436	63.09	c.1.11.1,d.54.1.1	29200,38844
1vliA	385	63.64	b.85.1.1,c.1.10.6	108830,108831
2pa2A	151	64.34		
1nf3C	128	65.34	b.36.1.1	85596
2q3gA	89	66.34		
2bazA	142	69.20		
2ioiA	201	70.96		
2i5oA	39	72.42		
1sr2A	116	72.82	a.24.10.4	112109
1uolA	219	73.50	b.2.5.2	99695
1mfgA	95	75.56	b.36.1.1	79043
2g1kA	176	80.63	c.37.1.2	134519
5palA	109	83.80	a.39.1.4	17215
2btoA	473	84.01		
2rczA	81	84.63		
2he2A	102	85.47		
2p3wA	112	86.21		
2f3yA	148	86.25		
1ucsA	64	86.32	b.85.1.1	88466
2fe5A	94	87.59	b.36.1.1	133323
1dunA	134	88.23	b.85.4.1	28371
2pezA	179	88.59		
2pa1A	87	89.33		
2bl0C	142	89.61