# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	7.31e-20		
3bo5A	290	1.43e-19		
1zkkA	167	2.84e-19		
2rfiA	285	2.86e-19		
2r3aA	300	3.89e-19		
2igqA	285	4.34e-19		
2o8jA	281	1.15e-18		
1ml9A	302	5.39e-18	b.85.7.1	79282
2f69A	261	6.49e-18	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	2.19e-17	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	4.21e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	3.68e-07	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	2.085	b.95.1.1	126717
1lm5A	214	8.719	d.211.2.1	74029
2pcxA	220	17.00		
2bsyA	278	18.45	b.85.4.1,b.85.4.1	129129,129130
1svb	395	20.13		
1vm9A	111	20.22	b.33.1.1	108886
1rutX	188	20.27	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
2p52A	196	25.48		
1vkkA	154	29.70	d.109.1.2	108669
1zxuA	217	29.88	d.23.1.2	125796
1lm7A	248	32.57	d.211.2.1	74031
2bazA	142	35.48		
2dafA	118	39.95		
2i5nH	258	41.54	b.41.1.1,f.23.10.1	137064,137065
1rzhH	260	42.67	b.41.1.1,f.23.10.1	98162,98163
2f57A	317	42.96		
1dxrH	258	45.89	b.41.1.1,f.23.10.1	25456,43433
1tkiA	321	46.74	d.144.1.7	41638
1uolA	219	47.97	b.2.5.2	99695
1h4xA	117	48.69	c.13.2.1	60626
1w50A	411	49.00	b.50.1.2	109173
1jofA	365	52.48	b.69.10.1	71775
1yhvA	297	52.86		
1gpr	162	53.51		
1s9rA	410	55.91	d.126.1.4	98758
2dg1A	333	56.56	b.68.6.1	131493
1wleA	501	58.07		
2ioiA	201	58.66		
2b79A	144	59.94		
2q4mA	217	61.70	d.23.1.2	139870
2biqA	219	64.81		
1jpaA	312	66.07	d.144.1.7	67011
1dpoA	223	66.81	b.47.1.2	25975
1b2pA	119	66.97	b.78.1.1	27998
1dunA	134	67.83	b.85.4.1	28371
1dv1A	449	69.24	b.84.2.1,c.30.1.1,d.142.1.2	28234,31641,41486
2j21A	219	71.85		
2jz8A	87	72.73		
1dv2A	452	73.20	b.84.2.1,c.30.1.1,d.142.1.2	28238,31645,41490
2nutB	753	74.04		
1wqjB	80	74.29		
2psoA	237	74.80		
1utcA	363	75.06	a.118.1.4,b.69.6.1	99914,99915
2zdrA	349	76.28		
1r13A	148	84.98	d.169.1.1,h.1.1.1	96782,96783
1buuA	168	85.96	d.169.1.1,h.1.1.1	42366,45388
1f3zA	161	87.61	b.84.3.1	28273
1qpcA	279	87.69	d.144.1.7	41685
1m2tB	263	89.67	b.42.2.1,b.42.2.1	84762,84763